Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06550

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybbW and glxR are separated by 169 nucleotidesglxR and hyi are separated by 99 nucleotideshyi and gcl are separated by 12 nucleotides HEPCGN_06545: ybbW - putative allantoin permease, at 25,710 to 27,164 ybbW HEPCGN_06550: glxR - 2-hydroxy-3-oxopropionate reductase, at 27,334 to 28,212 glxR HEPCGN_06555: hyi - hydroxypyruvate isomerase, at 28,312 to 29,088 hyi HEPCGN_06560: gcl - glyoxylate carboligase, at 29,101 to 30,882 gcl Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1 2 3 4at 26.350 kb on + strand, within ybbWat 26.351 kb on - strand, within ybbWat 26.458 kb on - strand, within ybbWat 26.591 kb on - strand, within ybbWat 26.710 kb on - strand, within ybbWat 26.814 kb on - strand, within ybbWat 26.835 kb on + strand, within ybbWat 26.862 kb on + strand, within ybbWat 26.910 kb on - strand, within ybbWat 26.981 kb on + strand, within ybbWat 26.981 kb on + strand, within ybbWat 27.114 kb on + strandat 27.345 kb on + strandat 27.420 kb on + strandat 27.814 kb on - strand, within glxRat 27.975 kb on + strand, within glxRat 27.975 kb on + strand, within glxRat 28.018 kb on - strand, within glxRat 28.018 kb on - strand, within glxRat 28.281 kb on + strandat 28.282 kb on - strandat 28.818 kb on + strand, within hyiat 28.828 kb on + strand, within hyiat 28.936 kb on - strand, within hyiat 29.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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26,350 + ybbW HEPCGN_06545 0.44 -1.1
26,351 - ybbW HEPCGN_06545 0.44 +1.7
26,458 - ybbW HEPCGN_06545 0.51 +1.1
26,591 - ybbW HEPCGN_06545 0.61 +1.7
26,710 - ybbW HEPCGN_06545 0.69 -0.1
26,814 - ybbW HEPCGN_06545 0.76 -1.0
26,835 + ybbW HEPCGN_06545 0.77 +0.3
26,862 + ybbW HEPCGN_06545 0.79 +0.0
26,910 - ybbW HEPCGN_06545 0.82 -0.3
26,981 + ybbW HEPCGN_06545 0.87 -0.2
26,981 + ybbW HEPCGN_06545 0.87 +0.3
27,114 + -0.0
27,345 + -0.4
27,420 + +1.2
27,814 - glxR HEPCGN_06550 0.55 +0.9
27,975 + glxR HEPCGN_06550 0.73 +4.5
27,975 + glxR HEPCGN_06550 0.73 +0.4
28,018 - glxR HEPCGN_06550 0.78 +1.4
28,018 - glxR HEPCGN_06550 0.78 +0.3
28,281 + -0.3
28,282 - -0.4
28,818 + hyi HEPCGN_06555 0.65 +1.7
28,828 + hyi HEPCGN_06555 0.66 -0.3
28,936 - hyi HEPCGN_06555 0.80 +0.7
29,057 - +1.7

Or see this region's nucleotide sequence