Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmlR and leuE are separated by 126 nucleotides leuE and yeaR are separated by 172 nucleotides yeaR and yoaG are separated by 3 nucleotides yoaG and yeaQ are separated by 147 nucleotides yeaQ and yoaJ are separated by 58 nucleotides yoaJ and dgcP are separated by 133 nucleotides
HEPCGN_05020: dmlR - DNA-binding transcriptional regulator DmlR, at 881,211 to 882,134
dmlR
HEPCGN_05025: leuE - leucine efflux protein LeuE, at 882,261 to 882,899
leuE
HEPCGN_05030: yeaR - Uncharacterized protein YeaR, at 883,072 to 883,431
yeaR
HEPCGN_05035: yoaG - Protein YoaG, at 883,435 to 883,617
yoaG
HEPCGN_05040: yeaQ - UPF0410 protein YeaQ, at 883,765 to 884,013
yeaQ
HEPCGN_05045: yoaJ - protein YoaJ, at 884,072 to 884,146
yoaJ
HEPCGN_05050: dgcP - diguanylate cyclase DgcP, at 884,280 to 885,305
dgcP
Position (kb) 883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 882.137 kb on - strand at 882.190 kb on - strand at 882.258 kb on - strand at 882.413 kb on + strand, within leuE at 882.468 kb on - strand, within leuE at 882.497 kb on - strand, within leuE at 882.525 kb on + strand, within leuE at 882.597 kb on + strand, within leuE at 882.660 kb on + strand, within leuE at 882.801 kb on + strand, within leuE at 882.805 kb on + strand, within leuE at 882.805 kb on + strand, within leuE at 882.805 kb on + strand, within leuE at 882.806 kb on - strand, within leuE at 883.005 kb on + strand at 883.093 kb on + strand at 883.226 kb on - strand, within yeaR at 883.348 kb on + strand, within yeaR at 883.615 kb on + strand at 883.615 kb on + strand at 883.616 kb on - strand at 883.751 kb on + strand at 883.752 kb on - strand at 883.752 kb on - strand at 884.062 kb on - strand at 884.129 kb on - strand, within yoaJ at 884.129 kb on - strand, within yoaJ at 884.192 kb on - strand at 884.212 kb on - strand at 884.250 kb on + strand at 884.342 kb on - strand at 884.403 kb on + strand, within dgcP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 882,137 - +1.0 882,190 - +0.7 882,258 - -1.1 882,413 + leuE HEPCGN_05025 0.24 +0.5 882,468 - leuE HEPCGN_05025 0.32 +2.5 882,497 - leuE HEPCGN_05025 0.37 -1.7 882,525 + leuE HEPCGN_05025 0.41 -2.0 882,597 + leuE HEPCGN_05025 0.53 -0.4 882,660 + leuE HEPCGN_05025 0.62 -0.9 882,801 + leuE HEPCGN_05025 0.85 -3.2 882,805 + leuE HEPCGN_05025 0.85 +0.0 882,805 + leuE HEPCGN_05025 0.85 +0.5 882,805 + leuE HEPCGN_05025 0.85 -0.9 882,806 - leuE HEPCGN_05025 0.85 +0.3 883,005 + -0.2 883,093 + +0.7 883,226 - yeaR HEPCGN_05030 0.43 -2.8 883,348 + yeaR HEPCGN_05030 0.77 -0.7 883,615 + +1.2 883,615 + -0.4 883,616 - -0.9 883,751 + +0.0 883,752 - -0.7 883,752 - +0.4 884,062 - -0.0 884,129 - yoaJ HEPCGN_05045 0.76 +0.5 884,129 - yoaJ HEPCGN_05045 0.76 -0.6 884,192 - -0.2 884,212 - -0.2 884,250 + +0.7 884,342 - -1.3 884,403 + dgcP HEPCGN_05050 0.12 +1.7
Or see this region's nucleotide sequence