Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebS and msrC are separated by 75 nucleotides msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides
HEPCGN_04850: yebS - membrane integrity lipid transport subunit YebS, at 845,262 to 846,545
yebS
HEPCGN_04855: msrC - L-methionine (R)-S-oxide reductase, at 846,621 to 847,172
msrC
HEPCGN_04860: proQ - RNA chaperone ProQ, at 847,269 to 847,967
proQ
HEPCGN_04865: prc - carboxy terminal-processing peptidase, at 847,987 to 850,035
prc
Position (kb) 847
848 Strain fitness (log2 ratio) -2
-1
0
1
2 at 846.276 kb on - strand, within yebS at 846.276 kb on - strand, within yebS at 846.276 kb on - strand, within yebS at 846.504 kb on + strand at 846.504 kb on + strand at 846.505 kb on - strand at 846.537 kb on - strand at 846.559 kb on + strand at 846.570 kb on - strand at 846.576 kb on - strand at 846.576 kb on - strand at 846.581 kb on + strand at 846.627 kb on - strand at 846.653 kb on - strand at 846.672 kb on - strand at 846.778 kb on + strand, within msrC at 846.779 kb on - strand, within msrC at 846.779 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.781 kb on - strand, within msrC at 846.833 kb on + strand, within msrC at 846.966 kb on - strand, within msrC at 847.050 kb on - strand, within msrC at 847.094 kb on - strand, within msrC at 847.186 kb on + strand at 847.186 kb on + strand at 847.186 kb on + strand at 847.186 kb on + strand at 847.210 kb on + strand at 847.243 kb on + strand at 847.254 kb on + strand at 847.284 kb on - strand at 847.284 kb on - strand at 847.284 kb on - strand at 847.306 kb on + strand at 847.458 kb on + strand, within proQ at 848.001 kb on + strand at 848.054 kb on + strand at 848.091 kb on - strand at 848.225 kb on - strand, within prc at 848.297 kb on + strand, within prc at 848.297 kb on + strand, within prc at 848.422 kb on + strand, within prc at 848.422 kb on + strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.424 kb on + strand, within prc at 848.662 kb on - strand, within prc at 848.727 kb on + strand, within prc at 848.758 kb on + strand, within prc at 848.759 kb on - strand, within prc at 848.766 kb on + strand, within prc at 848.811 kb on + strand, within prc at 848.907 kb on + strand, within prc
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 846,276 - yebS HEPCGN_04850 0.79 +1.2 846,276 - yebS HEPCGN_04850 0.79 -0.5 846,276 - yebS HEPCGN_04850 0.79 -0.0 846,504 + -2.2 846,504 + +0.1 846,505 - +0.9 846,537 - -1.9 846,559 + +1.3 846,570 - +0.8 846,576 - -0.5 846,576 - +0.4 846,581 + +0.9 846,627 - -0.7 846,653 - -0.3 846,672 - +0.4 846,778 + msrC HEPCGN_04855 0.28 +0.1 846,779 - msrC HEPCGN_04855 0.29 -1.7 846,779 - msrC HEPCGN_04855 0.29 -1.9 846,781 - msrC HEPCGN_04855 0.29 -0.4 846,781 - msrC HEPCGN_04855 0.29 -0.1 846,781 - msrC HEPCGN_04855 0.29 +0.1 846,781 - msrC HEPCGN_04855 0.29 -1.0 846,781 - msrC HEPCGN_04855 0.29 +0.2 846,781 - msrC HEPCGN_04855 0.29 -0.0 846,833 + msrC HEPCGN_04855 0.38 -0.3 846,966 - msrC HEPCGN_04855 0.62 -0.3 847,050 - msrC HEPCGN_04855 0.78 -0.1 847,094 - msrC HEPCGN_04855 0.86 -0.4 847,186 + +0.2 847,186 + +0.1 847,186 + +0.3 847,186 + -0.9 847,210 + +0.5 847,243 + +0.9 847,254 + +0.7 847,284 - +0.2 847,284 - +0.1 847,284 - -0.6 847,306 + +1.5 847,458 + proQ HEPCGN_04860 0.27 +0.6 848,001 + +0.1 848,054 + +0.1 848,091 - +0.7 848,225 - prc HEPCGN_04865 0.12 -0.3 848,297 + prc HEPCGN_04865 0.15 +1.1 848,297 + prc HEPCGN_04865 0.15 +0.4 848,422 + prc HEPCGN_04865 0.21 +0.1 848,422 + prc HEPCGN_04865 0.21 +0.8 848,423 - prc HEPCGN_04865 0.21 -0.5 848,423 - prc HEPCGN_04865 0.21 +1.4 848,423 - prc HEPCGN_04865 0.21 +2.3 848,423 - prc HEPCGN_04865 0.21 +2.3 848,423 - prc HEPCGN_04865 0.21 +1.1 848,424 + prc HEPCGN_04865 0.21 +1.1 848,662 - prc HEPCGN_04865 0.33 -0.1 848,727 + prc HEPCGN_04865 0.36 +1.3 848,758 + prc HEPCGN_04865 0.38 +2.2 848,759 - prc HEPCGN_04865 0.38 +0.6 848,766 + prc HEPCGN_04865 0.38 +1.4 848,811 + prc HEPCGN_04865 0.40 -0.3 848,907 + prc HEPCGN_04865 0.45 -0.9
Or see this region's nucleotide sequence