Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04295 and HEPCGN_04300 overlap by 4 nucleotides HEPCGN_04300 and HEPCGN_04305 overlap by 4 nucleotides HEPCGN_04305 and HEPCGN_04310 are separated by 2 nucleotides HEPCGN_04310 and HEPCGN_04315 overlap by 1 nucleotides HEPCGN_04315 and HEPCGN_04320 are separated by 103 nucleotides HEPCGN_04320 and HEPCGN_04325 are separated by 45 nucleotides
HEPCGN_04295: HEPCGN_04295 - DUF2570 domain-containing protein, at 753,811 to 754,218
_04295
HEPCGN_04300: HEPCGN_04300 - peptidase M15, at 754,215 to 754,607
_04300
HEPCGN_04305: HEPCGN_04305 - holin, at 754,604 to 754,927
_04305
HEPCGN_04310: HEPCGN_04310 - phage tail protein, at 754,930 to 755,130
_04310
HEPCGN_04315: HEPCGN_04315 - capsid assembly protein, at 755,130 to 755,624
_04315
HEPCGN_04320: HEPCGN_04320 - terminase, at 755,728 to 756,528
_04320
HEPCGN_04325: HEPCGN_04325 - phage major capsid protein, P2 family, at 756,574 to 757,626
_04325
Position (kb)
755
756 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 754.382 kb on - strand, within HEPCGN_04300 at 754.426 kb on - strand, within HEPCGN_04300 at 754.554 kb on + strand, within HEPCGN_04300 at 754.633 kb on + strand at 754.658 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.858 kb on - strand, within HEPCGN_04305 at 754.858 kb on - strand, within HEPCGN_04305 at 755.075 kb on + strand, within HEPCGN_04310 at 755.214 kb on + strand, within HEPCGN_04315 at 755.215 kb on - strand, within HEPCGN_04315 at 755.215 kb on - strand, within HEPCGN_04315 at 755.300 kb on + strand, within HEPCGN_04315 at 755.302 kb on + strand, within HEPCGN_04315 at 755.349 kb on + strand, within HEPCGN_04315 at 755.350 kb on - strand, within HEPCGN_04315 at 755.618 kb on + strand at 756.007 kb on + strand, within HEPCGN_04320 at 756.008 kb on - strand, within HEPCGN_04320 at 756.209 kb on + strand, within HEPCGN_04320 at 756.209 kb on + strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.210 kb on - strand, within HEPCGN_04320 at 756.278 kb on - strand, within HEPCGN_04320 at 756.278 kb on - strand, within HEPCGN_04320 at 756.419 kb on + strand, within HEPCGN_04320 at 756.420 kb on - strand, within HEPCGN_04320 at 756.522 kb on + strand at 756.522 kb on + strand at 756.575 kb on + strand at 756.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 754,382 - HEPCGN_04300 0.42 +0.4 754,426 - HEPCGN_04300 0.54 -0.4 754,554 + HEPCGN_04300 0.86 +0.3 754,633 + +0.1 754,658 + HEPCGN_04305 0.17 +1.5 754,857 + HEPCGN_04305 0.78 +0.7 754,857 + HEPCGN_04305 0.78 -0.7 754,857 + HEPCGN_04305 0.78 -0.5 754,858 - HEPCGN_04305 0.78 -0.7 754,858 - HEPCGN_04305 0.78 -0.2 755,075 + HEPCGN_04310 0.72 +2.0 755,214 + HEPCGN_04315 0.17 -2.2 755,215 - HEPCGN_04315 0.17 -1.7 755,215 - HEPCGN_04315 0.17 -2.3 755,300 + HEPCGN_04315 0.34 +2.1 755,302 + HEPCGN_04315 0.35 +0.3 755,349 + HEPCGN_04315 0.44 -2.1 755,350 - HEPCGN_04315 0.44 +3.1 755,618 + -0.6 756,007 + HEPCGN_04320 0.35 -0.3 756,008 - HEPCGN_04320 0.35 -0.5 756,209 + HEPCGN_04320 0.60 +0.1 756,209 + HEPCGN_04320 0.60 +0.1 756,210 - HEPCGN_04320 0.60 -1.5 756,210 - HEPCGN_04320 0.60 +0.1 756,210 - HEPCGN_04320 0.60 -0.4 756,210 - HEPCGN_04320 0.60 -1.2 756,210 - HEPCGN_04320 0.60 -0.6 756,210 - HEPCGN_04320 0.60 -0.9 756,278 - HEPCGN_04320 0.69 +0.4 756,278 - HEPCGN_04320 0.69 -0.7 756,419 + HEPCGN_04320 0.86 -0.8 756,420 - HEPCGN_04320 0.86 -0.3 756,522 + +0.8 756,522 + +0.5 756,575 + -2.0 756,576 - +0.3
Or see this region's nucleotide sequence