Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrP and hiuH are separated by 108 nucleotides hiuH and hprR are separated by 21 nucleotides hprR and hprS overlap by 1 nucleotides
HEPCGN_03915: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 689,002 to 690,006
msrP
HEPCGN_03920: hiuH - hydroxyisourate hydrolase, at 690,115 to 690,528
hiuH
HEPCGN_03925: hprR - response regulator transcription factor HprR, at 690,550 to 691,332
hprR
HEPCGN_03930: hprS - two-component system sensor histidine kinase HprS, at 691,332 to 692,690
hprS
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.577 kb on + strand, within msrP at 689.583 kb on - strand, within msrP at 689.586 kb on + strand, within msrP at 689.929 kb on + strand at 689.929 kb on + strand at 689.971 kb on - strand at 690.110 kb on - strand at 690.110 kb on - strand at 690.171 kb on - strand, within hiuH at 690.171 kb on - strand, within hiuH at 690.265 kb on + strand, within hiuH at 690.508 kb on + strand at 690.511 kb on + strand at 690.535 kb on - strand at 690.590 kb on + strand at 690.590 kb on + strand at 690.591 kb on - strand at 690.638 kb on - strand, within hprR at 690.638 kb on - strand, within hprR at 690.813 kb on + strand, within hprR at 690.892 kb on - strand, within hprR at 691.004 kb on + strand, within hprR at 691.098 kb on + strand, within hprR at 691.098 kb on + strand, within hprR at 691.161 kb on - strand, within hprR at 691.218 kb on + strand, within hprR at 691.280 kb on + strand at 691.342 kb on + strand at 691.374 kb on - strand at 691.856 kb on - strand, within hprS at 691.929 kb on - strand, within hprS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 689,577 + msrP HEPCGN_03915 0.57 +2.0 689,583 - msrP HEPCGN_03915 0.58 -0.4 689,586 + msrP HEPCGN_03915 0.58 -0.7 689,929 + +0.5 689,929 + -0.4 689,971 - +0.6 690,110 - -0.5 690,110 - -0.4 690,171 - hiuH HEPCGN_03920 0.14 +0.5 690,171 - hiuH HEPCGN_03920 0.14 -0.5 690,265 + hiuH HEPCGN_03920 0.36 +0.2 690,508 + -1.5 690,511 + +0.9 690,535 - +1.3 690,590 + -0.8 690,590 + -0.8 690,591 - -0.3 690,638 - hprR HEPCGN_03925 0.11 -1.6 690,638 - hprR HEPCGN_03925 0.11 +0.5 690,813 + hprR HEPCGN_03925 0.34 +1.9 690,892 - hprR HEPCGN_03925 0.44 -1.4 691,004 + hprR HEPCGN_03925 0.58 +0.6 691,098 + hprR HEPCGN_03925 0.70 +2.4 691,098 + hprR HEPCGN_03925 0.70 +0.8 691,161 - hprR HEPCGN_03925 0.78 -0.7 691,218 + hprR HEPCGN_03925 0.85 -1.2 691,280 + -0.5 691,342 + -0.6 691,374 - -1.8 691,856 - hprS HEPCGN_03930 0.39 -3.1 691,929 - hprS HEPCGN_03930 0.44 -2.3
Or see this region's nucleotide sequence