Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03660 and HEPCGN_03665 are separated by 80 nucleotides HEPCGN_03665 and HEPCGN_03670 overlap by 17 nucleotides HEPCGN_03670 and HEPCGN_03675 overlap by 20 nucleotides HEPCGN_03675 and HEPCGN_03680 are separated by 40 nucleotides
HEPCGN_03660: HEPCGN_03660 - transcriptional regulator, at 651,817 to 652,224
_03660
HEPCGN_03665: HEPCGN_03665 - transcriptional regulator, at 652,305 to 652,532
_03665
HEPCGN_03670: HEPCGN_03670 - Putative bacterial toxin ydaT, at 652,516 to 653,037
_03670
HEPCGN_03675: HEPCGN_03675 - Ybl78, at 653,018 to 653,983
_03675
HEPCGN_03680: HEPCGN_03680 - DUF977 domain-containing protein, at 654,024 to 654,446
_03680
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 651.525 kb on + strand at 651.526 kb on - strand at 651.547 kb on + strand at 651.571 kb on - strand at 651.576 kb on + strand at 651.577 kb on - strand at 651.578 kb on + strand at 652.229 kb on - strand at 652.598 kb on + strand, within HEPCGN_03670 at 653.050 kb on + strand at 653.050 kb on + strand at 653.504 kb on - strand, within HEPCGN_03675 at 653.504 kb on - strand, within HEPCGN_03675 at 653.684 kb on + strand, within HEPCGN_03675
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 651,525 + -0.4 651,526 - -0.6 651,547 + -0.1 651,571 - -0.2 651,576 + +0.4 651,577 - -3.2 651,578 + -0.0 652,229 - -1.7 652,598 + HEPCGN_03670 0.16 -2.4 653,050 + -0.6 653,050 + -2.7 653,504 - HEPCGN_03675 0.50 -1.1 653,504 - HEPCGN_03675 0.50 -0.5 653,684 + HEPCGN_03675 0.69 -1.0
Or see this region's nucleotide sequence