Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03630 and HEPCGN_03635 are separated by 93 nucleotides HEPCGN_03635 and dicB overlap by 4 nucleotides dicB and ydfC are separated by 567 nucleotides
HEPCGN_03630: HEPCGN_03630 - exonuclease, at 647,520 to 649,961
_03630
HEPCGN_03635: HEPCGN_03635 - DUF1482 domain-containing protein, at 650,055 to 650,246
_03635
HEPCGN_03640: dicB - cell division inhibition protein DicB, at 650,243 to 650,431
dicB
HEPCGN_03650: ydfC - Uncharacterized protein YdfC, at 650,999 to 651,217
ydfC
Position (kb) 650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 649.156 kb on - strand, within HEPCGN_03630 at 649.315 kb on - strand, within HEPCGN_03630 at 649.427 kb on + strand, within HEPCGN_03630 at 649.474 kb on - strand, within HEPCGN_03630 at 649.474 kb on - strand, within HEPCGN_03630 at 649.619 kb on + strand, within HEPCGN_03630 at 649.619 kb on + strand, within HEPCGN_03630 at 649.620 kb on - strand, within HEPCGN_03630 at 649.805 kb on - strand at 649.886 kb on + strand at 650.020 kb on + strand at 650.187 kb on - strand, within HEPCGN_03635 at 650.755 kb on - strand at 650.830 kb on + strand at 650.841 kb on + strand at 650.841 kb on + strand at 650.842 kb on - strand at 650.887 kb on + strand at 651.013 kb on + strand at 651.014 kb on - strand at 651.062 kb on - strand, within ydfC at 651.163 kb on - strand, within ydfC at 651.179 kb on - strand, within ydfC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 649,156 - HEPCGN_03630 0.67 +1.5 649,315 - HEPCGN_03630 0.74 +2.4 649,427 + HEPCGN_03630 0.78 +0.4 649,474 - HEPCGN_03630 0.80 +0.3 649,474 - HEPCGN_03630 0.80 -0.4 649,619 + HEPCGN_03630 0.86 -2.0 649,619 + HEPCGN_03630 0.86 -0.2 649,620 - HEPCGN_03630 0.86 -1.2 649,805 - -1.0 649,886 + -2.9 650,020 + -0.8 650,187 - HEPCGN_03635 0.69 -0.9 650,755 - -1.7 650,830 + -0.4 650,841 + -1.9 650,841 + +0.8 650,842 - -0.2 650,887 + +0.3 651,013 + -0.5 651,014 - -1.6 651,062 - ydfC HEPCGN_03650 0.29 -1.8 651,163 - ydfC HEPCGN_03650 0.75 +0.4 651,179 - ydfC HEPCGN_03650 0.82 -1.2
Or see this region's nucleotide sequence