Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and HEPCGN_03625 overlap by 1 nucleotides HEPCGN_03625 and HEPCGN_03630 are separated by 58 nucleotides
HEPCGN_03620: xerD - integrase, at 646,233 to 647,258
xerD
HEPCGN_03625: HEPCGN_03625 - DUF4224 domain-containing protein, at 647,258 to 647,461
_03625
HEPCGN_03630: HEPCGN_03630 - exonuclease, at 647,520 to 649,961
_03630
Position (kb) 647
648 Strain fitness (log2 ratio) -1
0
1
2
3 at 646.375 kb on + strand, within xerD at 646.423 kb on - strand, within xerD at 646.461 kb on + strand, within xerD at 646.486 kb on + strand, within xerD at 646.490 kb on + strand, within xerD at 646.491 kb on - strand, within xerD at 646.492 kb on + strand, within xerD at 646.493 kb on - strand, within xerD at 646.518 kb on + strand, within xerD at 646.587 kb on + strand, within xerD at 646.587 kb on + strand, within xerD at 646.690 kb on + strand, within xerD at 646.738 kb on - strand, within xerD at 646.798 kb on - strand, within xerD at 646.798 kb on - strand, within xerD at 646.850 kb on - strand, within xerD at 646.850 kb on - strand, within xerD at 646.863 kb on - strand, within xerD at 646.892 kb on + strand, within xerD at 646.918 kb on + strand, within xerD at 646.918 kb on + strand, within xerD at 646.941 kb on + strand, within xerD at 646.962 kb on - strand, within xerD at 647.032 kb on + strand, within xerD at 647.035 kb on + strand, within xerD at 647.035 kb on + strand, within xerD at 647.184 kb on + strand at 647.188 kb on + strand at 647.188 kb on + strand at 647.188 kb on + strand at 647.188 kb on + strand at 647.188 kb on + strand at 647.189 kb on - strand at 647.189 kb on - strand at 647.189 kb on - strand at 647.208 kb on + strand at 647.209 kb on - strand at 647.282 kb on + strand, within HEPCGN_03625 at 647.314 kb on + strand, within HEPCGN_03625 at 647.406 kb on + strand, within HEPCGN_03625 at 647.407 kb on - strand, within HEPCGN_03625 at 647.407 kb on - strand, within HEPCGN_03625 at 647.423 kb on + strand, within HEPCGN_03625 at 647.465 kb on + strand at 647.465 kb on + strand at 647.466 kb on - strand at 647.466 kb on - strand at 647.466 kb on - strand at 647.467 kb on + strand at 647.484 kb on + strand at 647.485 kb on - strand at 647.488 kb on + strand at 647.488 kb on + strand at 647.489 kb on - strand at 647.492 kb on + strand at 647.492 kb on + strand at 647.493 kb on - strand at 647.509 kb on - strand at 647.695 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 646,375 + xerD HEPCGN_03620 0.14 -0.9 646,423 - xerD HEPCGN_03620 0.19 -1.3 646,461 + xerD HEPCGN_03620 0.22 -0.2 646,486 + xerD HEPCGN_03620 0.25 -0.6 646,490 + xerD HEPCGN_03620 0.25 -0.4 646,491 - xerD HEPCGN_03620 0.25 +0.2 646,492 + xerD HEPCGN_03620 0.25 -0.4 646,493 - xerD HEPCGN_03620 0.25 +0.3 646,518 + xerD HEPCGN_03620 0.28 -0.4 646,587 + xerD HEPCGN_03620 0.35 -0.0 646,587 + xerD HEPCGN_03620 0.35 +0.9 646,690 + xerD HEPCGN_03620 0.45 -1.0 646,738 - xerD HEPCGN_03620 0.49 +0.2 646,798 - xerD HEPCGN_03620 0.55 -1.3 646,798 - xerD HEPCGN_03620 0.55 -0.3 646,850 - xerD HEPCGN_03620 0.60 +3.1 646,850 - xerD HEPCGN_03620 0.60 -0.4 646,863 - xerD HEPCGN_03620 0.61 -0.1 646,892 + xerD HEPCGN_03620 0.64 +3.1 646,918 + xerD HEPCGN_03620 0.67 -0.3 646,918 + xerD HEPCGN_03620 0.67 -0.0 646,941 + xerD HEPCGN_03620 0.69 -0.9 646,962 - xerD HEPCGN_03620 0.71 -0.7 647,032 + xerD HEPCGN_03620 0.78 -0.9 647,035 + xerD HEPCGN_03620 0.78 +1.3 647,035 + xerD HEPCGN_03620 0.78 +0.5 647,184 + -0.6 647,188 + +1.0 647,188 + +0.7 647,188 + -0.5 647,188 + -0.0 647,188 + +0.6 647,189 - +0.8 647,189 - -0.9 647,189 - +0.0 647,208 + +0.7 647,209 - -0.2 647,282 + HEPCGN_03625 0.12 -1.0 647,314 + HEPCGN_03625 0.27 -0.2 647,406 + HEPCGN_03625 0.73 +1.8 647,407 - HEPCGN_03625 0.73 +2.1 647,407 - HEPCGN_03625 0.73 +0.3 647,423 + HEPCGN_03625 0.81 +0.0 647,465 + +0.8 647,465 + +0.1 647,466 - +0.5 647,466 - -0.8 647,466 - -1.4 647,467 + -0.2 647,484 + +0.6 647,485 - -0.4 647,488 + +0.0 647,488 + -1.6 647,489 - -1.2 647,492 + -1.6 647,492 + +0.1 647,493 - -0.7 647,509 - +0.1 647,695 + +2.0
Or see this region's nucleotide sequence