Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02555

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_02540 and HEPCGN_02545 are separated by 11 nucleotidesHEPCGN_02545 and HEPCGN_02550 overlap by 4 nucleotidesHEPCGN_02550 and HEPCGN_02555 overlap by 4 nucleotidesHEPCGN_02555 and HEPCGN_02560 are separated by 66 nucleotidesHEPCGN_02560 and HEPCGN_02565 are separated by 13 nucleotides HEPCGN_02540: HEPCGN_02540 - head-tail connector protein, at 410,776 to 411,102 _02540 HEPCGN_02545: HEPCGN_02545 - phage head closure protein, at 411,114 to 411,464 _02545 HEPCGN_02550: HEPCGN_02550 - Putative structural component HK97 gp of phage origin, at 411,461 to 411,907 _02550 HEPCGN_02555: HEPCGN_02555 - DUF3168 domain-containing protein, at 411,904 to 412,248 _02555 HEPCGN_02560: HEPCGN_02560 - phage tail protein, at 412,315 to 413,028 _02560 HEPCGN_02565: HEPCGN_02565 - phage tail protein, at 413,042 to 413,416 _02565 Position (kb) 411 412 413Strain fitness (log2 ratio) -1 0 1 2at 411.149 kb on - strand, within HEPCGN_02545at 411.169 kb on + strand, within HEPCGN_02545at 411.176 kb on + strand, within HEPCGN_02545at 411.579 kb on + strand, within HEPCGN_02550at 411.580 kb on - strand, within HEPCGN_02550at 411.580 kb on - strand, within HEPCGN_02550at 411.764 kb on + strand, within HEPCGN_02550at 411.796 kb on + strand, within HEPCGN_02550at 411.895 kb on - strandat 411.964 kb on + strand, within HEPCGN_02555at 411.965 kb on - strand, within HEPCGN_02555at 411.965 kb on - strand, within HEPCGN_02555at 411.965 kb on - strand, within HEPCGN_02555at 412.127 kb on + strand, within HEPCGN_02555at 412.192 kb on + strand, within HEPCGN_02555at 412.192 kb on + strand, within HEPCGN_02555at 412.192 kb on + strand, within HEPCGN_02555at 412.193 kb on - strand, within HEPCGN_02555at 412.213 kb on + strand, within HEPCGN_02555at 412.328 kb on - strandat 412.462 kb on - strand, within HEPCGN_02560at 412.586 kb on - strand, within HEPCGN_02560at 412.603 kb on + strand, within HEPCGN_02560at 412.741 kb on + strand, within HEPCGN_02560at 412.742 kb on - strand, within HEPCGN_02560at 412.742 kb on - strand, within HEPCGN_02560at 412.846 kb on + strand, within HEPCGN_02560at 412.848 kb on + strand, within HEPCGN_02560at 412.853 kb on - strand, within HEPCGN_02560at 412.853 kb on - strand, within HEPCGN_02560at 412.908 kb on + strand, within HEPCGN_02560at 412.917 kb on + strand, within HEPCGN_02560at 412.918 kb on - strand, within HEPCGN_02560at 412.942 kb on + strand, within HEPCGN_02560at 412.944 kb on + strand, within HEPCGN_02560at 412.944 kb on + strand, within HEPCGN_02560at 412.945 kb on - strand, within HEPCGN_02560at 412.945 kb on - strand, within HEPCGN_02560at 412.987 kb on - strandat 413.012 kb on + strandat 413.166 kb on - strand, within HEPCGN_02565

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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411,149 - HEPCGN_02545 0.10 -0.2
411,169 + HEPCGN_02545 0.16 -0.6
411,176 + HEPCGN_02545 0.18 +0.1
411,579 + HEPCGN_02550 0.26 -0.8
411,580 - HEPCGN_02550 0.27 -0.8
411,580 - HEPCGN_02550 0.27 -0.6
411,764 + HEPCGN_02550 0.68 -0.5
411,796 + HEPCGN_02550 0.75 +0.9
411,895 - +0.9
411,964 + HEPCGN_02555 0.17 -1.2
411,965 - HEPCGN_02555 0.18 +1.0
411,965 - HEPCGN_02555 0.18 +2.0
411,965 - HEPCGN_02555 0.18 -1.1
412,127 + HEPCGN_02555 0.65 +0.9
412,192 + HEPCGN_02555 0.83 +2.0
412,192 + HEPCGN_02555 0.83 -1.0
412,192 + HEPCGN_02555 0.83 +0.2
412,193 - HEPCGN_02555 0.84 -0.6
412,213 + HEPCGN_02555 0.90 +1.3
412,328 - -0.7
412,462 - HEPCGN_02560 0.21 -0.1
412,586 - HEPCGN_02560 0.38 +2.7
412,603 + HEPCGN_02560 0.40 +1.1
412,741 + HEPCGN_02560 0.60 -1.2
412,742 - HEPCGN_02560 0.60 -1.4
412,742 - HEPCGN_02560 0.60 +0.9
412,846 + HEPCGN_02560 0.74 -0.8
412,848 + HEPCGN_02560 0.75 -0.3
412,853 - HEPCGN_02560 0.75 +0.1
412,853 - HEPCGN_02560 0.75 +0.3
412,908 + HEPCGN_02560 0.83 -0.7
412,917 + HEPCGN_02560 0.84 +1.3
412,918 - HEPCGN_02560 0.84 -0.6
412,942 + HEPCGN_02560 0.88 -0.1
412,944 + HEPCGN_02560 0.88 +0.4
412,944 + HEPCGN_02560 0.88 +0.5
412,945 - HEPCGN_02560 0.88 -1.6
412,945 - HEPCGN_02560 0.88 +0.2
412,987 - +0.8
413,012 + -0.5
413,166 - HEPCGN_02565 0.33 +0.1

Or see this region's nucleotide sequence