Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02480 and HEPCGN_02485 are separated by 1 nucleotides HEPCGN_02485 and HEPCGN_02490 are separated by 338 nucleotides HEPCGN_02490 and HEPCGN_02495 are separated by 141 nucleotides HEPCGN_02495 and HEPCGN_02500 are separated by 41 nucleotides
HEPCGN_02480: HEPCGN_02480 - Membrane protein, at 401,644 to 401,757
_02480
HEPCGN_02485: HEPCGN_02485 - lysis protein, at 401,759 to 402,226
_02485
HEPCGN_02490: HEPCGN_02490 - Protein TonB, at 402,565 to 402,891
_02490
HEPCGN_02495: HEPCGN_02495 - DUF3950 domain-containing protein, at 403,033 to 403,224
_02495
HEPCGN_02500: HEPCGN_02500 - HNH endonuclease, at 403,266 to 403,631
_02500
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.581 kb on + strand at 401.581 kb on + strand at 401.582 kb on - strand at 401.685 kb on - strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.717 kb on + strand, within HEPCGN_02480 at 401.856 kb on - strand, within HEPCGN_02485 at 401.912 kb on - strand, within HEPCGN_02485 at 402.098 kb on - strand, within HEPCGN_02485 at 402.200 kb on + strand at 402.200 kb on + strand at 402.200 kb on + strand at 402.201 kb on - strand at 402.441 kb on + strand at 402.442 kb on - strand at 402.491 kb on + strand at 402.491 kb on + strand at 402.532 kb on + strand at 402.619 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.679 kb on + strand, within HEPCGN_02490 at 402.680 kb on - strand, within HEPCGN_02490 at 402.694 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.697 kb on - strand, within HEPCGN_02490 at 402.699 kb on - strand, within HEPCGN_02490 at 402.803 kb on + strand, within HEPCGN_02490 at 402.927 kb on - strand at 402.949 kb on - strand at 402.980 kb on + strand at 402.981 kb on - strand at 403.000 kb on + strand at 403.224 kb on + strand at 403.225 kb on - strand at 403.228 kb on + strand at 403.281 kb on - strand at 403.325 kb on + strand, within HEPCGN_02500 at 403.385 kb on + strand, within HEPCGN_02500 at 403.385 kb on + strand, within HEPCGN_02500 at 403.415 kb on + strand, within HEPCGN_02500 at 403.416 kb on - strand, within HEPCGN_02500 at 403.488 kb on - strand, within HEPCGN_02500 at 403.562 kb on + strand, within HEPCGN_02500 at 403.737 kb on - strand at 403.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 401,581 + -0.3 401,581 + +0.5 401,582 - -0.8 401,685 - HEPCGN_02480 0.36 +0.7 401,712 + HEPCGN_02480 0.60 -0.2 401,712 + HEPCGN_02480 0.60 -0.6 401,717 + HEPCGN_02480 0.64 +1.5 401,856 - HEPCGN_02485 0.21 +0.3 401,912 - HEPCGN_02485 0.33 +0.2 402,098 - HEPCGN_02485 0.72 -0.8 402,200 + -2.3 402,200 + -0.5 402,200 + +1.0 402,201 - +1.1 402,441 + +0.7 402,442 - +0.7 402,491 + +0.1 402,491 + -0.2 402,532 + +0.9 402,619 - HEPCGN_02490 0.17 -0.8 402,663 - HEPCGN_02490 0.30 +0.8 402,663 - HEPCGN_02490 0.30 -0.5 402,679 + HEPCGN_02490 0.35 +2.2 402,680 - HEPCGN_02490 0.35 +0.3 402,694 + HEPCGN_02490 0.39 -0.3 402,696 + HEPCGN_02490 0.40 -1.7 402,696 + HEPCGN_02490 0.40 +1.9 402,697 - HEPCGN_02490 0.40 -0.5 402,699 - HEPCGN_02490 0.41 +0.6 402,803 + HEPCGN_02490 0.73 -0.1 402,927 - -1.4 402,949 - -1.9 402,980 + +0.1 402,981 - -1.2 403,000 + -0.7 403,224 + +1.0 403,225 - -0.2 403,228 + +0.1 403,281 - -0.4 403,325 + HEPCGN_02500 0.16 +0.9 403,385 + HEPCGN_02500 0.33 -0.6 403,385 + HEPCGN_02500 0.33 -0.8 403,415 + HEPCGN_02500 0.41 -0.7 403,416 - HEPCGN_02500 0.41 +1.1 403,488 - HEPCGN_02500 0.61 +0.6 403,562 + HEPCGN_02500 0.81 -0.2 403,737 - +0.3 403,843 - -0.3
Or see this region's nucleotide sequence