Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01270 and gltA are separated by 46 nucleotides gltA and ybgU are separated by 205 nucleotides ybgU and sdhC are separated by 380 nucleotides
HEPCGN_01270: HEPCGN_01270 - C4-dicarboxylate ABC transporter, at 179,346 to 180,656
_01270
HEPCGN_01275: gltA - citrate synthase, at 180,703 to 181,986
gltA
HEPCGN_01280: ybgU - Protein YbgU, at 182,192 to 182,299
ybgU
HEPCGN_01285: sdhC - succinate dehydrogenase cytochrome b556 subunit, at 182,680 to 183,084
sdhC
Position (kb) 180
181
182 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 179.737 kb on + strand, within HEPCGN_01270 at 179.822 kb on + strand, within HEPCGN_01270 at 179.823 kb on - strand, within HEPCGN_01270 at 179.832 kb on - strand, within HEPCGN_01270 at 180.056 kb on - strand, within HEPCGN_01270 at 180.056 kb on - strand, within HEPCGN_01270 at 180.119 kb on - strand, within HEPCGN_01270 at 180.127 kb on + strand, within HEPCGN_01270 at 180.128 kb on - strand, within HEPCGN_01270 at 180.141 kb on - strand, within HEPCGN_01270 at 180.181 kb on + strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270 at 180.387 kb on - strand, within HEPCGN_01270 at 180.407 kb on - strand, within HEPCGN_01270 at 180.416 kb on - strand, within HEPCGN_01270 at 180.416 kb on - strand, within HEPCGN_01270 at 180.490 kb on + strand, within HEPCGN_01270 at 180.533 kb on - strand at 180.536 kb on + strand at 180.537 kb on - strand at 180.537 kb on - strand at 180.539 kb on + strand at 180.539 kb on + strand at 180.540 kb on - strand at 180.600 kb on - strand at 180.620 kb on + strand at 180.620 kb on + strand at 180.620 kb on + strand at 180.624 kb on + strand at 180.624 kb on + strand at 180.625 kb on - strand at 180.654 kb on + strand at 180.655 kb on - strand at 180.655 kb on - strand at 180.660 kb on + strand at 180.714 kb on + strand at 180.749 kb on + strand at 180.852 kb on + strand, within gltA at 180.853 kb on - strand, within gltA at 180.853 kb on - strand, within gltA at 181.406 kb on + strand, within gltA at 181.406 kb on + strand, within gltA at 181.407 kb on - strand, within gltA at 181.452 kb on - strand, within gltA at 181.457 kb on + strand, within gltA at 181.550 kb on + strand, within gltA at 181.576 kb on - strand, within gltA at 181.668 kb on + strand, within gltA at 181.669 kb on - strand, within gltA at 181.685 kb on + strand, within gltA at 181.686 kb on - strand, within gltA at 181.686 kb on - strand, within gltA at 181.724 kb on + strand, within gltA at 181.725 kb on - strand, within gltA at 181.725 kb on - strand, within gltA at 181.743 kb on + strand, within gltA at 181.744 kb on - strand, within gltA at 181.809 kb on + strand, within gltA at 182.030 kb on + strand at 182.031 kb on - strand at 182.210 kb on - strand, within ybgU at 182.213 kb on - strand, within ybgU at 182.252 kb on - strand, within ybgU at 182.255 kb on + strand, within ybgU at 182.255 kb on + strand, within ybgU at 182.261 kb on - strand, within ybgU at 182.300 kb on + strand at 182.301 kb on - strand at 182.301 kb on - strand at 182.301 kb on - strand at 182.301 kb on - strand at 182.424 kb on + strand at 182.425 kb on - strand at 182.427 kb on - strand at 182.566 kb on + strand at 182.567 kb on - strand at 182.668 kb on - strand at 182.670 kb on + strand at 182.671 kb on - strand at 182.739 kb on - strand, within sdhC at 182.769 kb on - strand, within sdhC at 182.910 kb on + strand, within sdhC at 182.941 kb on + strand, within sdhC at 182.942 kb on - strand, within sdhC at 182.954 kb on + strand, within sdhC at 182.958 kb on + strand, within sdhC at 182.959 kb on - strand, within sdhC at 182.959 kb on - strand, within sdhC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 179,737 + HEPCGN_01270 0.30 +0.4 179,822 + HEPCGN_01270 0.36 +1.4 179,823 - HEPCGN_01270 0.36 +0.3 179,832 - HEPCGN_01270 0.37 -0.4 180,056 - HEPCGN_01270 0.54 +0.3 180,056 - HEPCGN_01270 0.54 -0.8 180,119 - HEPCGN_01270 0.59 +0.7 180,127 + HEPCGN_01270 0.60 -0.7 180,128 - HEPCGN_01270 0.60 +0.4 180,141 - HEPCGN_01270 0.61 -0.2 180,181 + HEPCGN_01270 0.64 -0.5 180,182 - HEPCGN_01270 0.64 +0.5 180,182 - HEPCGN_01270 0.64 -0.8 180,182 - HEPCGN_01270 0.64 -0.3 180,387 - HEPCGN_01270 0.79 +2.6 180,407 - HEPCGN_01270 0.81 +0.7 180,416 - HEPCGN_01270 0.82 -0.1 180,416 - HEPCGN_01270 0.82 +0.5 180,490 + HEPCGN_01270 0.87 -0.8 180,533 - -0.1 180,536 + +1.0 180,537 - +0.0 180,537 - +0.3 180,539 + +0.4 180,539 + -0.9 180,540 - -0.0 180,600 - -0.1 180,620 + -0.4 180,620 + +1.7 180,620 + +0.4 180,624 + +1.0 180,624 + +0.4 180,625 - +1.7 180,654 + -0.1 180,655 - -0.0 180,655 - +0.2 180,660 + -1.4 180,714 + -1.9 180,749 + -1.6 180,852 + gltA HEPCGN_01275 0.12 -2.2 180,853 - gltA HEPCGN_01275 0.12 -1.2 180,853 - gltA HEPCGN_01275 0.12 -1.4 181,406 + gltA HEPCGN_01275 0.55 -2.1 181,406 + gltA HEPCGN_01275 0.55 -1.0 181,407 - gltA HEPCGN_01275 0.55 -1.0 181,452 - gltA HEPCGN_01275 0.58 -2.3 181,457 + gltA HEPCGN_01275 0.59 -0.8 181,550 + gltA HEPCGN_01275 0.66 -2.3 181,576 - gltA HEPCGN_01275 0.68 -1.8 181,668 + gltA HEPCGN_01275 0.75 +0.4 181,669 - gltA HEPCGN_01275 0.75 -1.2 181,685 + gltA HEPCGN_01275 0.76 -1.8 181,686 - gltA HEPCGN_01275 0.77 -1.7 181,686 - gltA HEPCGN_01275 0.77 -2.8 181,724 + gltA HEPCGN_01275 0.80 -2.6 181,725 - gltA HEPCGN_01275 0.80 -2.0 181,725 - gltA HEPCGN_01275 0.80 -2.3 181,743 + gltA HEPCGN_01275 0.81 -1.1 181,744 - gltA HEPCGN_01275 0.81 -3.5 181,809 + gltA HEPCGN_01275 0.86 -2.8 182,030 + -1.6 182,031 - -1.7 182,210 - ybgU HEPCGN_01280 0.17 -1.2 182,213 - ybgU HEPCGN_01280 0.19 -0.3 182,252 - ybgU HEPCGN_01280 0.56 -0.5 182,255 + ybgU HEPCGN_01280 0.58 -0.9 182,255 + ybgU HEPCGN_01280 0.58 -2.4 182,261 - ybgU HEPCGN_01280 0.64 -2.4 182,300 + +0.2 182,301 - +0.1 182,301 - +0.8 182,301 - +0.6 182,301 - -2.7 182,424 + -1.2 182,425 - +0.3 182,427 - -1.1 182,566 + -0.8 182,567 - -1.4 182,668 - -0.1 182,670 + -1.2 182,671 - -3.0 182,739 - sdhC HEPCGN_01285 0.15 -0.5 182,769 - sdhC HEPCGN_01285 0.22 -0.3 182,910 + sdhC HEPCGN_01285 0.57 -1.8 182,941 + sdhC HEPCGN_01285 0.64 -0.6 182,942 - sdhC HEPCGN_01285 0.65 -3.8 182,954 + sdhC HEPCGN_01285 0.68 -2.8 182,958 + sdhC HEPCGN_01285 0.69 -1.2 182,959 - sdhC HEPCGN_01285 0.69 -2.5 182,959 - sdhC HEPCGN_01285 0.69 -3.3
Or see this region's nucleotide sequence