Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04735

Experiment: RB49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthexR and HEPCGN_04735 are separated by 22 nucleotidesHEPCGN_04735 and zwf are separated by 164 nucleotides HEPCGN_04730: hexR - DNA-binding transcriptional regulator HexR, at 825,288 to 826,157 hexR HEPCGN_04735: HEPCGN_04735 - hypothetical protein, at 826,180 to 826,329 _04735 HEPCGN_04740: zwf - glucose-6-phosphate dehydrogenase, at 826,494 to 827,969 zwf Position (kb) 826 827Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 825.219 kb on + strandat 825.260 kb on + strandat 825.309 kb on - strandat 825.313 kb on - strandat 825.417 kb on + strand, within hexRat 825.418 kb on - strand, within hexRat 825.418 kb on - strand, within hexRat 825.455 kb on + strand, within hexRat 825.456 kb on - strand, within hexRat 825.456 kb on - strand, within hexRat 825.456 kb on - strand, within hexRat 825.457 kb on + strand, within hexRat 825.457 kb on + strand, within hexRat 825.457 kb on + strand, within hexRat 825.458 kb on - strand, within hexRat 825.468 kb on - strand, within hexRat 825.544 kb on - strand, within hexRat 825.549 kb on - strand, within hexRat 825.605 kb on + strand, within hexRat 825.648 kb on - strand, within hexRat 825.648 kb on - strand, within hexRat 825.671 kb on + strand, within hexRat 825.699 kb on - strand, within hexRat 825.713 kb on + strand, within hexRat 825.750 kb on + strand, within hexRat 825.920 kb on - strand, within hexRat 826.229 kb on + strand, within HEPCGN_04735at 826.229 kb on + strand, within HEPCGN_04735at 826.230 kb on - strand, within HEPCGN_04735at 826.288 kb on - strand, within HEPCGN_04735at 826.413 kb on - strandat 826.421 kb on + strandat 826.422 kb on - strandat 826.449 kb on - strandat 826.451 kb on - strandat 826.476 kb on + strandat 826.477 kb on - strandat 826.482 kb on - strandat 826.655 kb on + strand, within zwfat 826.665 kb on + strand, within zwfat 826.666 kb on - strand, within zwfat 826.839 kb on + strand, within zwfat 826.921 kb on + strand, within zwfat 827.010 kb on + strand, within zwf

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Per-strain Table

Position Strand Gene LocusTag Fraction RB49
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825,219 + +3.0
825,260 + +1.5
825,309 - -1.4
825,313 - +0.3
825,417 + hexR HEPCGN_04730 0.15 -3.2
825,418 - hexR HEPCGN_04730 0.15 +0.7
825,418 - hexR HEPCGN_04730 0.15 -0.3
825,455 + hexR HEPCGN_04730 0.19 -0.7
825,456 - hexR HEPCGN_04730 0.19 +0.6
825,456 - hexR HEPCGN_04730 0.19 -1.2
825,456 - hexR HEPCGN_04730 0.19 +0.3
825,457 + hexR HEPCGN_04730 0.19 -0.3
825,457 + hexR HEPCGN_04730 0.19 -0.1
825,457 + hexR HEPCGN_04730 0.19 -1.4
825,458 - hexR HEPCGN_04730 0.20 +0.3
825,468 - hexR HEPCGN_04730 0.21 -2.7
825,544 - hexR HEPCGN_04730 0.29 +0.9
825,549 - hexR HEPCGN_04730 0.30 +0.0
825,605 + hexR HEPCGN_04730 0.36 -2.1
825,648 - hexR HEPCGN_04730 0.41 -0.9
825,648 - hexR HEPCGN_04730 0.41 -1.6
825,671 + hexR HEPCGN_04730 0.44 -1.5
825,699 - hexR HEPCGN_04730 0.47 -0.9
825,713 + hexR HEPCGN_04730 0.49 +1.3
825,750 + hexR HEPCGN_04730 0.53 +0.6
825,920 - hexR HEPCGN_04730 0.73 -0.2
826,229 + HEPCGN_04735 0.33 +1.0
826,229 + HEPCGN_04735 0.33 +0.1
826,230 - HEPCGN_04735 0.33 +0.5
826,288 - HEPCGN_04735 0.72 +0.5
826,413 - -0.9
826,421 + -0.6
826,422 - -0.3
826,449 - +0.0
826,451 - -1.0
826,476 + -1.0
826,477 - -2.8
826,482 - +0.5
826,655 + zwf HEPCGN_04740 0.11 -1.1
826,665 + zwf HEPCGN_04740 0.12 +0.8
826,666 - zwf HEPCGN_04740 0.12 -0.5
826,839 + zwf HEPCGN_04740 0.23 +0.1
826,921 + zwf HEPCGN_04740 0.29 -0.9
827,010 + zwf HEPCGN_04740 0.35 -1.4

Or see this region's nucleotide sequence