Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motA and motB overlap by 4 nucleotides motB and cheA are separated by 4 nucleotides cheA and cheW are separated by 20 nucleotides cheW and tar are separated by 144 nucleotides
HEPCGN_04530: motA - flagellar motor stator protein MotA, at 788,025 to 788,912
motA
HEPCGN_04535: motB - flagellar motor protein MotB, at 788,909 to 789,835
motB
HEPCGN_04540: cheA - chemotaxis protein CheA, at 789,840 to 791,804
cheA
HEPCGN_04545: cheW - chemotaxis protein CheW, at 791,825 to 792,328
cheW
HEPCGN_04555: tar - methyl-accepting chemotaxis protein II, at 792,473 to 794,134
tar
Position (kb) 789
790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.007 kb on + strand, within motB at 789.053 kb on - strand, within motB at 789.053 kb on - strand, within motB at 789.202 kb on + strand, within motB at 789.203 kb on - strand, within motB at 789.203 kb on - strand, within motB at 789.351 kb on + strand, within motB at 789.356 kb on - strand, within motB at 789.392 kb on - strand, within motB at 789.392 kb on - strand, within motB at 789.419 kb on + strand, within motB at 789.464 kb on - strand, within motB at 789.475 kb on + strand, within motB at 789.476 kb on - strand, within motB at 789.493 kb on + strand, within motB at 789.494 kb on - strand, within motB at 789.532 kb on + strand, within motB at 790.100 kb on + strand, within cheA at 790.101 kb on - strand, within cheA at 790.152 kb on + strand, within cheA at 790.154 kb on + strand, within cheA at 790.192 kb on - strand, within cheA at 790.194 kb on - strand, within cheA at 790.304 kb on + strand, within cheA at 790.664 kb on + strand, within cheA at 790.664 kb on + strand, within cheA at 790.939 kb on + strand, within cheA at 790.940 kb on - strand, within cheA at 790.979 kb on + strand, within cheA at 790.980 kb on - strand, within cheA at 791.028 kb on - strand, within cheA at 791.201 kb on - strand, within cheA at 791.280 kb on - strand, within cheA at 791.280 kb on - strand, within cheA at 791.283 kb on - strand, within cheA at 791.520 kb on - strand, within cheA at 791.593 kb on + strand, within cheA at 791.593 kb on + strand, within cheA at 791.636 kb on - strand at 791.676 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.818 kb on + strand at 791.844 kb on + strand at 791.886 kb on + strand, within cheW at 791.886 kb on + strand, within cheW at 791.891 kb on - strand, within cheW at 791.891 kb on - strand, within cheW at 791.891 kb on - strand, within cheW at 792.068 kb on + strand, within cheW at 792.084 kb on + strand, within cheW at 792.301 kb on - strand at 792.304 kb on + strand at 792.305 kb on - strand at 792.327 kb on - strand at 792.472 kb on + strand at 792.478 kb on + strand at 792.535 kb on - strand at 792.541 kb on + strand at 792.610 kb on - strand at 792.648 kb on + strand, within tar at 792.649 kb on - strand, within tar at 792.649 kb on - strand, within tar at 792.655 kb on - strand, within tar at 792.722 kb on - strand, within tar at 792.722 kb on - strand, within tar at 792.782 kb on + strand, within tar at 792.783 kb on - strand, within tar at 792.784 kb on + strand, within tar
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 789,007 + motB HEPCGN_04535 0.11 +0.4 789,053 - motB HEPCGN_04535 0.16 -0.0 789,053 - motB HEPCGN_04535 0.16 +0.1 789,202 + motB HEPCGN_04535 0.32 -0.6 789,203 - motB HEPCGN_04535 0.32 +1.0 789,203 - motB HEPCGN_04535 0.32 -0.2 789,351 + motB HEPCGN_04535 0.48 -0.6 789,356 - motB HEPCGN_04535 0.48 -0.8 789,392 - motB HEPCGN_04535 0.52 +1.4 789,392 - motB HEPCGN_04535 0.52 +0.9 789,419 + motB HEPCGN_04535 0.55 -1.3 789,464 - motB HEPCGN_04535 0.60 +0.8 789,475 + motB HEPCGN_04535 0.61 +0.3 789,476 - motB HEPCGN_04535 0.61 +1.1 789,493 + motB HEPCGN_04535 0.63 +0.5 789,494 - motB HEPCGN_04535 0.63 -0.0 789,532 + motB HEPCGN_04535 0.67 -1.0 790,100 + cheA HEPCGN_04540 0.13 -0.3 790,101 - cheA HEPCGN_04540 0.13 -1.0 790,152 + cheA HEPCGN_04540 0.16 -0.2 790,154 + cheA HEPCGN_04540 0.16 +0.6 790,192 - cheA HEPCGN_04540 0.18 +2.4 790,194 - cheA HEPCGN_04540 0.18 +1.1 790,304 + cheA HEPCGN_04540 0.24 -0.3 790,664 + cheA HEPCGN_04540 0.42 -0.6 790,664 + cheA HEPCGN_04540 0.42 -1.1 790,939 + cheA HEPCGN_04540 0.56 +0.2 790,940 - cheA HEPCGN_04540 0.56 +0.4 790,979 + cheA HEPCGN_04540 0.58 -1.3 790,980 - cheA HEPCGN_04540 0.58 -0.2 791,028 - cheA HEPCGN_04540 0.60 +0.3 791,201 - cheA HEPCGN_04540 0.69 -0.0 791,280 - cheA HEPCGN_04540 0.73 +0.1 791,280 - cheA HEPCGN_04540 0.73 -0.9 791,283 - cheA HEPCGN_04540 0.73 +0.7 791,520 - cheA HEPCGN_04540 0.85 -1.3 791,593 + cheA HEPCGN_04540 0.89 +0.2 791,593 + cheA HEPCGN_04540 0.89 -1.6 791,636 - -0.2 791,676 - -0.0 791,784 - +0.3 791,784 - -1.0 791,784 - -0.1 791,818 + +0.8 791,844 + +0.4 791,886 + cheW HEPCGN_04545 0.12 +2.5 791,886 + cheW HEPCGN_04545 0.12 -0.8 791,891 - cheW HEPCGN_04545 0.13 +1.3 791,891 - cheW HEPCGN_04545 0.13 +0.1 791,891 - cheW HEPCGN_04545 0.13 -0.4 792,068 + cheW HEPCGN_04545 0.48 -1.6 792,084 + cheW HEPCGN_04545 0.51 -0.9 792,301 - +1.2 792,304 + +2.1 792,305 - +1.1 792,327 - +0.4 792,472 + +0.2 792,478 + -0.7 792,535 - +1.2 792,541 + +1.7 792,610 - +0.1 792,648 + tar HEPCGN_04555 0.11 -0.1 792,649 - tar HEPCGN_04555 0.11 +1.4 792,649 - tar HEPCGN_04555 0.11 +0.3 792,655 - tar HEPCGN_04555 0.11 +0.8 792,722 - tar HEPCGN_04555 0.15 +0.6 792,722 - tar HEPCGN_04555 0.15 -1.4 792,782 + tar HEPCGN_04555 0.19 -2.3 792,783 - tar HEPCGN_04555 0.19 -0.0 792,784 + tar HEPCGN_04555 0.19 -1.1
Or see this region's nucleotide sequence