Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03810 and HEPCGN_03815 are separated by 76 nucleotides HEPCGN_03815 and HEPCGN_03820 are separated by 8 nucleotides HEPCGN_03820 and HEPCGN_03825 overlap by 1 nucleotides HEPCGN_03825 and HEPCGN_03830 overlap by 4 nucleotides HEPCGN_03830 and HEPCGN_03835 are separated by 8 nucleotides
HEPCGN_03810: HEPCGN_03810 - phage major capsid protein, at 669,362 to 670,579
_03810
HEPCGN_03815: HEPCGN_03815 - head-tail connector protein, at 670,656 to 670,973
_03815
HEPCGN_03820: HEPCGN_03820 - phage head closure protein, at 670,982 to 671,320
_03820
HEPCGN_03825: HEPCGN_03825 - Bacteriophage HK97-gp10, putative tail-component, at 671,320 to 671,766
_03825
HEPCGN_03830: HEPCGN_03830 - DUF3168 domain-containing protein, at 671,763 to 672,107
_03830
HEPCGN_03835: HEPCGN_03835 - phage tail protein, at 672,116 to 672,871
_03835
Position (kb) 670
671
672 Strain fitness (log2 ratio) -2
-1
0
1
2 at 670.028 kb on + strand, within HEPCGN_03810 at 670.239 kb on - strand, within HEPCGN_03810 at 670.274 kb on - strand, within HEPCGN_03810 at 670.274 kb on - strand, within HEPCGN_03810 at 670.362 kb on - strand, within HEPCGN_03810 at 670.436 kb on - strand, within HEPCGN_03810 at 670.450 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.455 kb on - strand, within HEPCGN_03810 at 670.596 kb on + strand at 670.597 kb on - strand at 670.727 kb on - strand, within HEPCGN_03815 at 670.737 kb on + strand, within HEPCGN_03815 at 670.788 kb on + strand, within HEPCGN_03815 at 670.829 kb on + strand, within HEPCGN_03815 at 670.830 kb on - strand, within HEPCGN_03815 at 670.831 kb on + strand, within HEPCGN_03815 at 670.832 kb on - strand, within HEPCGN_03815 at 670.999 kb on - strand at 671.011 kb on - strand at 671.080 kb on + strand, within HEPCGN_03820 at 671.081 kb on - strand, within HEPCGN_03820 at 671.098 kb on + strand, within HEPCGN_03820 at 671.122 kb on - strand, within HEPCGN_03820 at 671.227 kb on + strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.293 kb on - strand at 671.742 kb on + strand at 671.757 kb on - strand at 671.757 kb on - strand at 671.823 kb on + strand, within HEPCGN_03830 at 671.823 kb on + strand, within HEPCGN_03830 at 671.937 kb on - strand, within HEPCGN_03830 at 672.032 kb on + strand, within HEPCGN_03830 at 672.033 kb on - strand, within HEPCGN_03830 at 672.098 kb on - strand at 672.100 kb on + strand at 672.166 kb on + strand at 672.167 kb on - strand at 672.254 kb on + strand, within HEPCGN_03835 at 672.255 kb on - strand, within HEPCGN_03835 at 672.272 kb on - strand, within HEPCGN_03835
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 670,028 + HEPCGN_03810 0.55 +0.1 670,239 - HEPCGN_03810 0.72 -0.1 670,274 - HEPCGN_03810 0.75 -2.4 670,274 - HEPCGN_03810 0.75 -0.3 670,362 - HEPCGN_03810 0.82 -0.4 670,436 - HEPCGN_03810 0.88 -0.8 670,450 + HEPCGN_03810 0.89 -0.5 670,454 + HEPCGN_03810 0.90 -1.2 670,454 + HEPCGN_03810 0.90 -0.1 670,454 + HEPCGN_03810 0.90 +0.0 670,455 - HEPCGN_03810 0.90 -0.6 670,596 + -0.6 670,597 - +0.2 670,727 - HEPCGN_03815 0.22 -1.2 670,737 + HEPCGN_03815 0.25 -0.1 670,788 + HEPCGN_03815 0.42 -0.5 670,829 + HEPCGN_03815 0.54 -0.2 670,830 - HEPCGN_03815 0.55 -1.2 670,831 + HEPCGN_03815 0.55 +0.8 670,832 - HEPCGN_03815 0.55 -1.4 670,999 - +1.0 671,011 - -0.7 671,080 + HEPCGN_03820 0.29 +0.5 671,081 - HEPCGN_03820 0.29 +0.6 671,098 + HEPCGN_03820 0.34 -0.2 671,122 - HEPCGN_03820 0.41 -1.9 671,227 + HEPCGN_03820 0.72 -0.7 671,248 - HEPCGN_03820 0.78 +0.1 671,248 - HEPCGN_03820 0.78 -0.1 671,248 - HEPCGN_03820 0.78 -1.1 671,293 - +1.5 671,742 + +1.5 671,757 - -0.1 671,757 - -0.4 671,823 + HEPCGN_03830 0.17 -0.6 671,823 + HEPCGN_03830 0.17 +2.2 671,937 - HEPCGN_03830 0.50 +0.4 672,032 + HEPCGN_03830 0.78 -0.0 672,033 - HEPCGN_03830 0.78 -0.9 672,098 - +1.1 672,100 + -0.1 672,166 + +0.5 672,167 - -0.5 672,254 + HEPCGN_03835 0.18 +0.3 672,255 - HEPCGN_03835 0.18 -0.1 672,272 - HEPCGN_03835 0.21 -0.9
Or see this region's nucleotide sequence