Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nagZ and ycfP are separated by 22 nucleotides ycfP and ndh are separated by 399 nucleotides ndh and ycfJ are separated by 226 nucleotides ycfJ and comR are separated by 61 nucleotides
HEPCGN_23980: nagZ - beta-N-acetylhexosaminidase, at 3,582,107 to 3,583,132
nagZ
HEPCGN_23985: ycfP - alpha/beta hydrolase YcfP, at 3,583,155 to 3,583,697
ycfP
HEPCGN_23990: ndh - NADH-quinone dehydrogenase, at 3,584,097 to 3,585,401
ndh
HEPCGN_23995: ycfJ - Uncharacterized protein YcfJ, at 3,585,628 to 3,586,167
ycfJ
HEPCGN_24000: comR - TetR family copper-responsive transcriptional repressor ComR, at 3,586,229 to 3,586,861
comR
Position (kb)
3584
3585
3586 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3583.160 kb on + strand at 3583.161 kb on - strand at 3583.164 kb on + strand at 3583.165 kb on - strand at 3583.240 kb on + strand, within ycfP at 3583.254 kb on + strand, within ycfP at 3583.281 kb on - strand, within ycfP at 3583.476 kb on + strand, within ycfP at 3583.476 kb on + strand, within ycfP at 3583.602 kb on + strand, within ycfP at 3583.839 kb on + strand at 3583.839 kb on + strand at 3583.854 kb on - strand at 3583.854 kb on - strand at 3583.968 kb on - strand at 3584.054 kb on - strand at 3584.084 kb on + strand at 3584.175 kb on - strand at 3584.298 kb on + strand, within ndh at 3584.465 kb on + strand, within ndh at 3584.608 kb on + strand, within ndh at 3584.608 kb on + strand, within ndh at 3584.609 kb on - strand, within ndh at 3584.691 kb on + strand, within ndh at 3584.692 kb on - strand, within ndh at 3584.698 kb on - strand, within ndh at 3584.700 kb on - strand, within ndh at 3584.804 kb on - strand, within ndh at 3584.886 kb on + strand, within ndh at 3584.886 kb on + strand, within ndh at 3584.887 kb on - strand, within ndh at 3584.889 kb on - strand, within ndh at 3584.949 kb on - strand, within ndh at 3585.027 kb on + strand, within ndh at 3585.027 kb on + strand, within ndh at 3585.028 kb on - strand, within ndh at 3585.172 kb on - strand, within ndh at 3585.285 kb on + strand at 3585.285 kb on + strand at 3585.285 kb on + strand at 3585.286 kb on - strand at 3585.362 kb on + strand at 3585.362 kb on + strand at 3585.399 kb on + strand at 3585.531 kb on - strand at 3585.621 kb on + strand at 3585.769 kb on - strand, within ycfJ at 3585.798 kb on + strand, within ycfJ at 3585.798 kb on + strand, within ycfJ at 3585.991 kb on + strand, within ycfJ at 3585.991 kb on + strand, within ycfJ at 3585.991 kb on + strand, within ycfJ at 3585.992 kb on - strand, within ycfJ at 3586.025 kb on - strand, within ycfJ at 3586.025 kb on - strand, within ycfJ at 3586.063 kb on + strand, within ycfJ at 3586.063 kb on + strand, within ycfJ at 3586.064 kb on - strand, within ycfJ at 3586.064 kb on - strand, within ycfJ at 3586.064 kb on - strand, within ycfJ at 3586.132 kb on - strand at 3586.164 kb on - strand at 3586.231 kb on - strand at 3586.330 kb on + strand, within comR at 3586.334 kb on - strand, within comR at 3586.339 kb on + strand, within comR at 3586.340 kb on - strand, within comR
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 3,583,160 + -0.1 3,583,161 - +1.0 3,583,164 + -1.4 3,583,165 - +0.4 3,583,240 + ycfP HEPCGN_23985 0.16 -0.4 3,583,254 + ycfP HEPCGN_23985 0.18 -0.3 3,583,281 - ycfP HEPCGN_23985 0.23 -0.9 3,583,476 + ycfP HEPCGN_23985 0.59 -0.6 3,583,476 + ycfP HEPCGN_23985 0.59 -0.1 3,583,602 + ycfP HEPCGN_23985 0.82 +1.4 3,583,839 + +0.4 3,583,839 + -1.1 3,583,854 - -1.1 3,583,854 - -0.7 3,583,968 - -0.3 3,584,054 - -1.3 3,584,084 + -1.4 3,584,175 - +0.5 3,584,298 + ndh HEPCGN_23990 0.15 -1.8 3,584,465 + ndh HEPCGN_23990 0.28 -0.9 3,584,608 + ndh HEPCGN_23990 0.39 -0.1 3,584,608 + ndh HEPCGN_23990 0.39 -0.8 3,584,609 - ndh HEPCGN_23990 0.39 -2.1 3,584,691 + ndh HEPCGN_23990 0.46 -0.6 3,584,692 - ndh HEPCGN_23990 0.46 +0.9 3,584,698 - ndh HEPCGN_23990 0.46 +0.9 3,584,700 - ndh HEPCGN_23990 0.46 -2.7 3,584,804 - ndh HEPCGN_23990 0.54 +0.2 3,584,886 + ndh HEPCGN_23990 0.60 -0.7 3,584,886 + ndh HEPCGN_23990 0.60 -1.9 3,584,887 - ndh HEPCGN_23990 0.61 +0.4 3,584,889 - ndh HEPCGN_23990 0.61 +0.7 3,584,949 - ndh HEPCGN_23990 0.65 -0.9 3,585,027 + ndh HEPCGN_23990 0.71 +0.1 3,585,027 + ndh HEPCGN_23990 0.71 +2.4 3,585,028 - ndh HEPCGN_23990 0.71 -0.7 3,585,172 - ndh HEPCGN_23990 0.82 -2.2 3,585,285 + -0.8 3,585,285 + +0.2 3,585,285 + +2.2 3,585,286 - -1.1 3,585,362 + +0.7 3,585,362 + -1.1 3,585,399 + -3.8 3,585,531 - -1.0 3,585,621 + -0.5 3,585,769 - ycfJ HEPCGN_23995 0.26 -0.3 3,585,798 + ycfJ HEPCGN_23995 0.31 -1.2 3,585,798 + ycfJ HEPCGN_23995 0.31 -0.8 3,585,991 + ycfJ HEPCGN_23995 0.67 -0.9 3,585,991 + ycfJ HEPCGN_23995 0.67 +0.3 3,585,991 + ycfJ HEPCGN_23995 0.67 -0.2 3,585,992 - ycfJ HEPCGN_23995 0.67 +0.2 3,586,025 - ycfJ HEPCGN_23995 0.74 -0.3 3,586,025 - ycfJ HEPCGN_23995 0.74 +0.8 3,586,063 + ycfJ HEPCGN_23995 0.81 -0.8 3,586,063 + ycfJ HEPCGN_23995 0.81 +0.4 3,586,064 - ycfJ HEPCGN_23995 0.81 -0.3 3,586,064 - ycfJ HEPCGN_23995 0.81 -2.0 3,586,064 - ycfJ HEPCGN_23995 0.81 +0.0 3,586,132 - -0.7 3,586,164 - +0.3 3,586,231 - +1.1 3,586,330 + comR HEPCGN_24000 0.16 -0.1 3,586,334 - comR HEPCGN_24000 0.17 +0.8 3,586,339 + comR HEPCGN_24000 0.17 -2.3 3,586,340 - comR HEPCGN_24000 0.18 -0.5
Or see this region's nucleotide sequence