Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23990

Experiment: CEV1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnagZ and ycfP are separated by 22 nucleotidesycfP and ndh are separated by 399 nucleotidesndh and ycfJ are separated by 226 nucleotidesycfJ and comR are separated by 61 nucleotides HEPCGN_23980: nagZ - beta-N-acetylhexosaminidase, at 3,582,107 to 3,583,132 nagZ HEPCGN_23985: ycfP - alpha/beta hydrolase YcfP, at 3,583,155 to 3,583,697 ycfP HEPCGN_23990: ndh - NADH-quinone dehydrogenase, at 3,584,097 to 3,585,401 ndh HEPCGN_23995: ycfJ - Uncharacterized protein YcfJ, at 3,585,628 to 3,586,167 ycfJ HEPCGN_24000: comR - TetR family copper-responsive transcriptional repressor ComR, at 3,586,229 to 3,586,861 comR Position (kb) 3584 3585 3586Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3583.160 kb on + strandat 3583.161 kb on - strandat 3583.164 kb on + strandat 3583.165 kb on - strandat 3583.240 kb on + strand, within ycfPat 3583.254 kb on + strand, within ycfPat 3583.281 kb on - strand, within ycfPat 3583.476 kb on + strand, within ycfPat 3583.476 kb on + strand, within ycfPat 3583.602 kb on + strand, within ycfPat 3583.839 kb on + strandat 3583.839 kb on + strandat 3583.854 kb on - strandat 3583.854 kb on - strandat 3583.968 kb on - strandat 3584.054 kb on - strandat 3584.084 kb on + strandat 3584.175 kb on - strandat 3584.298 kb on + strand, within ndhat 3584.465 kb on + strand, within ndhat 3584.608 kb on + strand, within ndhat 3584.608 kb on + strand, within ndhat 3584.609 kb on - strand, within ndhat 3584.691 kb on + strand, within ndhat 3584.692 kb on - strand, within ndhat 3584.698 kb on - strand, within ndhat 3584.700 kb on - strand, within ndhat 3584.804 kb on - strand, within ndhat 3584.886 kb on + strand, within ndhat 3584.886 kb on + strand, within ndhat 3584.887 kb on - strand, within ndhat 3584.889 kb on - strand, within ndhat 3584.949 kb on - strand, within ndhat 3585.027 kb on + strand, within ndhat 3585.027 kb on + strand, within ndhat 3585.028 kb on - strand, within ndhat 3585.172 kb on - strand, within ndhat 3585.285 kb on + strandat 3585.285 kb on + strandat 3585.285 kb on + strandat 3585.286 kb on - strandat 3585.362 kb on + strandat 3585.362 kb on + strandat 3585.399 kb on + strandat 3585.531 kb on - strandat 3585.621 kb on + strandat 3585.769 kb on - strand, within ycfJat 3585.798 kb on + strand, within ycfJat 3585.798 kb on + strand, within ycfJat 3585.991 kb on + strand, within ycfJat 3585.991 kb on + strand, within ycfJat 3585.991 kb on + strand, within ycfJat 3585.992 kb on - strand, within ycfJat 3586.025 kb on - strand, within ycfJat 3586.025 kb on - strand, within ycfJat 3586.063 kb on + strand, within ycfJat 3586.063 kb on + strand, within ycfJat 3586.064 kb on - strand, within ycfJat 3586.064 kb on - strand, within ycfJat 3586.064 kb on - strand, within ycfJat 3586.132 kb on - strandat 3586.164 kb on - strandat 3586.231 kb on - strandat 3586.330 kb on + strand, within comRat 3586.334 kb on - strand, within comRat 3586.339 kb on + strand, within comRat 3586.340 kb on - strand, within comR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
remove
3,583,160 + -0.1
3,583,161 - +1.0
3,583,164 + -1.4
3,583,165 - +0.4
3,583,240 + ycfP HEPCGN_23985 0.16 -0.4
3,583,254 + ycfP HEPCGN_23985 0.18 -0.3
3,583,281 - ycfP HEPCGN_23985 0.23 -0.9
3,583,476 + ycfP HEPCGN_23985 0.59 -0.6
3,583,476 + ycfP HEPCGN_23985 0.59 -0.1
3,583,602 + ycfP HEPCGN_23985 0.82 +1.4
3,583,839 + +0.4
3,583,839 + -1.1
3,583,854 - -1.1
3,583,854 - -0.7
3,583,968 - -0.3
3,584,054 - -1.3
3,584,084 + -1.4
3,584,175 - +0.5
3,584,298 + ndh HEPCGN_23990 0.15 -1.8
3,584,465 + ndh HEPCGN_23990 0.28 -0.9
3,584,608 + ndh HEPCGN_23990 0.39 -0.1
3,584,608 + ndh HEPCGN_23990 0.39 -0.8
3,584,609 - ndh HEPCGN_23990 0.39 -2.1
3,584,691 + ndh HEPCGN_23990 0.46 -0.6
3,584,692 - ndh HEPCGN_23990 0.46 +0.9
3,584,698 - ndh HEPCGN_23990 0.46 +0.9
3,584,700 - ndh HEPCGN_23990 0.46 -2.7
3,584,804 - ndh HEPCGN_23990 0.54 +0.2
3,584,886 + ndh HEPCGN_23990 0.60 -0.7
3,584,886 + ndh HEPCGN_23990 0.60 -1.9
3,584,887 - ndh HEPCGN_23990 0.61 +0.4
3,584,889 - ndh HEPCGN_23990 0.61 +0.7
3,584,949 - ndh HEPCGN_23990 0.65 -0.9
3,585,027 + ndh HEPCGN_23990 0.71 +0.1
3,585,027 + ndh HEPCGN_23990 0.71 +2.4
3,585,028 - ndh HEPCGN_23990 0.71 -0.7
3,585,172 - ndh HEPCGN_23990 0.82 -2.2
3,585,285 + -0.8
3,585,285 + +0.2
3,585,285 + +2.2
3,585,286 - -1.1
3,585,362 + +0.7
3,585,362 + -1.1
3,585,399 + -3.8
3,585,531 - -1.0
3,585,621 + -0.5
3,585,769 - ycfJ HEPCGN_23995 0.26 -0.3
3,585,798 + ycfJ HEPCGN_23995 0.31 -1.2
3,585,798 + ycfJ HEPCGN_23995 0.31 -0.8
3,585,991 + ycfJ HEPCGN_23995 0.67 -0.9
3,585,991 + ycfJ HEPCGN_23995 0.67 +0.3
3,585,991 + ycfJ HEPCGN_23995 0.67 -0.2
3,585,992 - ycfJ HEPCGN_23995 0.67 +0.2
3,586,025 - ycfJ HEPCGN_23995 0.74 -0.3
3,586,025 - ycfJ HEPCGN_23995 0.74 +0.8
3,586,063 + ycfJ HEPCGN_23995 0.81 -0.8
3,586,063 + ycfJ HEPCGN_23995 0.81 +0.4
3,586,064 - ycfJ HEPCGN_23995 0.81 -0.3
3,586,064 - ycfJ HEPCGN_23995 0.81 -2.0
3,586,064 - ycfJ HEPCGN_23995 0.81 +0.0
3,586,132 - -0.7
3,586,164 - +0.3
3,586,231 - +1.1
3,586,330 + comR HEPCGN_24000 0.16 -0.1
3,586,334 - comR HEPCGN_24000 0.17 +0.8
3,586,339 + comR HEPCGN_24000 0.17 -2.3
3,586,340 - comR HEPCGN_24000 0.18 -0.5

Or see this region's nucleotide sequence