Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23640

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcgsG and cgsF are separated by 26 nucleotidescgsF and cgsE are separated by 24 nucleotidescgsE and cgsD are separated by 4 nucleotides HEPCGN_23630: cgsG - curli production assembly/transport protein CsgG, at 3,522,584 to 3,523,417 cgsG HEPCGN_23635: cgsF - curli production assembly/transport protein CsgF, at 3,523,444 to 3,523,860 cgsF HEPCGN_23640: cgsE - curli production assembly/transport protein CsgE, at 3,523,885 to 3,524,274 cgsE HEPCGN_23645: cgsD - transcriptional regulator CsgD, at 3,524,279 to 3,524,929 cgsD Position (kb) 3523 3524 3525Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3523.012 kb on + strand, within cgsGat 3523.048 kb on + strand, within cgsGat 3523.051 kb on + strand, within cgsGat 3523.087 kb on + strand, within cgsGat 3523.211 kb on - strand, within cgsGat 3523.258 kb on - strand, within cgsGat 3523.311 kb on + strand, within cgsGat 3523.331 kb on + strand, within cgsGat 3523.332 kb on - strand, within cgsGat 3523.382 kb on + strandat 3523.407 kb on - strandat 3524.091 kb on + strand, within cgsEat 3524.128 kb on - strand, within cgsEat 3524.462 kb on - strand, within cgsDat 3524.493 kb on + strand, within cgsDat 3524.494 kb on - strand, within cgsDat 3524.517 kb on + strand, within cgsDat 3524.517 kb on + strand, within cgsDat 3524.604 kb on + strand, within cgsDat 3524.711 kb on - strand, within cgsDat 3524.728 kb on + strand, within cgsDat 3524.783 kb on - strand, within cgsDat 3524.783 kb on - strand, within cgsDat 3524.803 kb on + strand, within cgsDat 3524.897 kb on - strandat 3524.908 kb on + strandat 3524.912 kb on - strandat 3525.055 kb on - strandat 3525.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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3,523,012 + cgsG HEPCGN_23630 0.51 -0.1
3,523,048 + cgsG HEPCGN_23630 0.56 +0.3
3,523,051 + cgsG HEPCGN_23630 0.56 +0.4
3,523,087 + cgsG HEPCGN_23630 0.60 +0.5
3,523,211 - cgsG HEPCGN_23630 0.75 -1.0
3,523,258 - cgsG HEPCGN_23630 0.81 +0.6
3,523,311 + cgsG HEPCGN_23630 0.87 -0.1
3,523,331 + cgsG HEPCGN_23630 0.90 +1.6
3,523,332 - cgsG HEPCGN_23630 0.90 -1.0
3,523,382 + +0.6
3,523,407 - -0.5
3,524,091 + cgsE HEPCGN_23640 0.53 -0.8
3,524,128 - cgsE HEPCGN_23640 0.62 -1.0
3,524,462 - cgsD HEPCGN_23645 0.28 +0.2
3,524,493 + cgsD HEPCGN_23645 0.33 +2.8
3,524,494 - cgsD HEPCGN_23645 0.33 -1.5
3,524,517 + cgsD HEPCGN_23645 0.37 +1.8
3,524,517 + cgsD HEPCGN_23645 0.37 +0.3
3,524,604 + cgsD HEPCGN_23645 0.50 +1.6
3,524,711 - cgsD HEPCGN_23645 0.66 +0.3
3,524,728 + cgsD HEPCGN_23645 0.69 +0.9
3,524,783 - cgsD HEPCGN_23645 0.77 -2.4
3,524,783 - cgsD HEPCGN_23645 0.77 -0.7
3,524,803 + cgsD HEPCGN_23645 0.80 -0.8
3,524,897 - +0.6
3,524,908 + +1.3
3,524,912 - +1.1
3,525,055 - +0.8
3,525,168 + -1.8

Or see this region's nucleotide sequence