Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cgsG and cgsF are separated by 26 nucleotides cgsF and cgsE are separated by 24 nucleotides cgsE and cgsD are separated by 4 nucleotides
HEPCGN_23630: cgsG - curli production assembly/transport protein CsgG, at 3,522,584 to 3,523,417
cgsG
HEPCGN_23635: cgsF - curli production assembly/transport protein CsgF, at 3,523,444 to 3,523,860
cgsF
HEPCGN_23640: cgsE - curli production assembly/transport protein CsgE, at 3,523,885 to 3,524,274
cgsE
HEPCGN_23645: cgsD - transcriptional regulator CsgD, at 3,524,279 to 3,524,929
cgsD
Position (kb)
3523
3524
3525 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3523.012 kb on + strand, within cgsG at 3523.048 kb on + strand, within cgsG at 3523.051 kb on + strand, within cgsG at 3523.087 kb on + strand, within cgsG at 3523.211 kb on - strand, within cgsG at 3523.258 kb on - strand, within cgsG at 3523.311 kb on + strand, within cgsG at 3523.331 kb on + strand, within cgsG at 3523.332 kb on - strand, within cgsG at 3523.382 kb on + strand at 3523.407 kb on - strand at 3524.091 kb on + strand, within cgsE at 3524.128 kb on - strand, within cgsE at 3524.462 kb on - strand, within cgsD at 3524.493 kb on + strand, within cgsD at 3524.494 kb on - strand, within cgsD at 3524.517 kb on + strand, within cgsD at 3524.517 kb on + strand, within cgsD at 3524.604 kb on + strand, within cgsD at 3524.711 kb on - strand, within cgsD at 3524.728 kb on + strand, within cgsD at 3524.783 kb on - strand, within cgsD at 3524.783 kb on - strand, within cgsD at 3524.803 kb on + strand, within cgsD at 3524.897 kb on - strand at 3524.908 kb on + strand at 3524.912 kb on - strand at 3525.055 kb on - strand at 3525.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 3,523,012 + cgsG HEPCGN_23630 0.51 -0.1 3,523,048 + cgsG HEPCGN_23630 0.56 +0.3 3,523,051 + cgsG HEPCGN_23630 0.56 +0.4 3,523,087 + cgsG HEPCGN_23630 0.60 +0.5 3,523,211 - cgsG HEPCGN_23630 0.75 -1.0 3,523,258 - cgsG HEPCGN_23630 0.81 +0.6 3,523,311 + cgsG HEPCGN_23630 0.87 -0.1 3,523,331 + cgsG HEPCGN_23630 0.90 +1.6 3,523,332 - cgsG HEPCGN_23630 0.90 -1.0 3,523,382 + +0.6 3,523,407 - -0.5 3,524,091 + cgsE HEPCGN_23640 0.53 -0.8 3,524,128 - cgsE HEPCGN_23640 0.62 -1.0 3,524,462 - cgsD HEPCGN_23645 0.28 +0.2 3,524,493 + cgsD HEPCGN_23645 0.33 +2.8 3,524,494 - cgsD HEPCGN_23645 0.33 -1.5 3,524,517 + cgsD HEPCGN_23645 0.37 +1.8 3,524,517 + cgsD HEPCGN_23645 0.37 +0.3 3,524,604 + cgsD HEPCGN_23645 0.50 +1.6 3,524,711 - cgsD HEPCGN_23645 0.66 +0.3 3,524,728 + cgsD HEPCGN_23645 0.69 +0.9 3,524,783 - cgsD HEPCGN_23645 0.77 -2.4 3,524,783 - cgsD HEPCGN_23645 0.77 -0.7 3,524,803 + cgsD HEPCGN_23645 0.80 -0.8 3,524,897 - +0.6 3,524,908 + +1.3 3,524,912 - +1.1 3,525,055 - +0.8 3,525,168 + -1.8
Or see this region's nucleotide sequence