Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23500

Experiment: CEV1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CEV1
3,494,418	+	rutG	HEPCGN_23495	0.30	-1.4
3,494,429	+	rutG	HEPCGN_23495	0.31	+0.7
3,494,429	+	rutG	HEPCGN_23495	0.31	+0.4
3,494,429	+	rutG	HEPCGN_23495	0.31	+0.3
3,494,430	-	rutG	HEPCGN_23495	0.31	-0.6
3,494,430	-	rutG	HEPCGN_23495	0.31	-2.0
3,494,430	-	rutG	HEPCGN_23495	0.31	-0.9
3,494,505	+	rutG	HEPCGN_23495	0.36	+0.8
3,494,507	+	rutG	HEPCGN_23495	0.37	+0.9
3,494,508	-	rutG	HEPCGN_23495	0.37	-0.3
3,494,508	-	rutG	HEPCGN_23495	0.37	-0.7
3,494,557	+	rutG	HEPCGN_23495	0.40	-1.2
3,494,616	+	rutG	HEPCGN_23495	0.45	-1.5
3,494,720	+	rutG	HEPCGN_23495	0.53	-0.6
3,494,740	+	rutG	HEPCGN_23495	0.54	-1.5
3,494,741	-	rutG	HEPCGN_23495	0.54	-0.4
3,494,741	-	rutG	HEPCGN_23495	0.54	-0.2
3,494,869	-	rutG	HEPCGN_23495	0.64	-0.5
3,494,981	+	rutG	HEPCGN_23495	0.72	+3.5
3,494,982	-	rutG	HEPCGN_23495	0.72	+2.0
3,495,102	-	rutG	HEPCGN_23495	0.81	-1.0
3,495,102	-	rutG	HEPCGN_23495	0.81	+0.1
3,495,160	+	rutG	HEPCGN_23495	0.86	+1.2
3,495,160	+	rutG	HEPCGN_23495	0.86	-0.6
3,495,161	-	rutG	HEPCGN_23495	0.86	+0.2
3,495,202	+	rutG	HEPCGN_23495	0.89	-0.4
3,495,648	-	rutF	HEPCGN_23500	0.56	-1.7
3,495,652	-	rutF	HEPCGN_23500	0.57	-0.5
3,495,800	+	rutF	HEPCGN_23500	0.87	-1.8
3,495,855	+				-1.2
3,495,855	+				-0.4
3,495,864	-				+0.2
3,495,924	-				-0.4
3,496,323	+	rutE	HEPCGN_23505	0.76	+0.0
3,496,323	+	rutE	HEPCGN_23505	0.76	+1.0
3,496,324	-	rutE	HEPCGN_23505	0.76	+0.1
3,496,355	+	rutE	HEPCGN_23505	0.81	+0.5
3,496,355	+	rutE	HEPCGN_23505	0.81	+2.1
3,496,435	-				+0.6
3,496,435	-				-0.6
3,496,464	+				-1.2
3,496,475	+				-0.7
3,496,523	-				+0.7
3,496,523	-				-2.1
3,496,523	-				+5.2
3,496,523	-				+0.4
3,496,705	-	rutD	HEPCGN_23510	0.29	+0.3
3,496,729	-	rutD	HEPCGN_23510	0.32	-1.6