Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23225

Experiment: CEV1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CEV1
3,438,707	-	fimA	HEPCGN_23215	0.80	+0.2
3,438,710	+	fimA	HEPCGN_23215	0.81	-0.0
3,438,711	-	fimA	HEPCGN_23215	0.81	-1.9
3,438,716	+	fimA	HEPCGN_23215	0.82	-0.1
3,438,810	+				+0.6
3,438,819	+				-0.5
3,438,915	+	fimC	HEPCGN_23220	0.12	+0.3
3,438,946	-	fimC	HEPCGN_23220	0.17	-0.9
3,438,957	+	fimC	HEPCGN_23220	0.18	+0.4
3,438,958	-	fimC	HEPCGN_23220	0.18	+1.7
3,438,961	-	fimC	HEPCGN_23220	0.19	-1.3
3,438,981	+	fimC	HEPCGN_23220	0.22	-0.4
3,438,982	-	fimC	HEPCGN_23220	0.22	-0.4
3,438,985	-	fimC	HEPCGN_23220	0.22	-1.4
3,438,991	-	fimC	HEPCGN_23220	0.23	+0.4
3,439,037	+	fimC	HEPCGN_23220	0.30	-0.9
3,439,069	-	fimC	HEPCGN_23220	0.34	-0.4
3,439,069	-	fimC	HEPCGN_23220	0.34	+0.0
3,439,090	-	fimC	HEPCGN_23220	0.37	+1.1
3,439,152	-	fimC	HEPCGN_23220	0.46	-1.2
3,439,160	+	fimC	HEPCGN_23220	0.48	+0.0
3,439,161	-	fimC	HEPCGN_23220	0.48	+0.2
3,439,205	+	fimC	HEPCGN_23220	0.54	-2.8
3,439,205	+	fimC	HEPCGN_23220	0.54	-1.4
3,439,279	+	fimC	HEPCGN_23220	0.65	+0.9
3,439,316	+	fimC	HEPCGN_23220	0.70	+1.4
3,439,340	-	fimC	HEPCGN_23220	0.74	+1.2
3,439,342	+	fimC	HEPCGN_23220	0.74	+0.6
3,439,342	+	fimC	HEPCGN_23220	0.74	-0.9
3,439,343	-	fimC	HEPCGN_23220	0.74	-0.7
3,439,343	-	fimC	HEPCGN_23220	0.74	-0.3
3,439,347	+	fimC	HEPCGN_23220	0.75	-0.2
3,439,348	-	fimC	HEPCGN_23220	0.75	+0.2
3,439,348	-	fimC	HEPCGN_23220	0.75	+1.3
3,439,368	-	fimC	HEPCGN_23220	0.78	+0.1
3,439,375	-	fimC	HEPCGN_23220	0.79	+1.2
3,439,440	+	fimC	HEPCGN_23220	0.88	-0.6
3,439,441	-	fimC	HEPCGN_23220	0.88	-0.6
3,439,442	+	fimC	HEPCGN_23220	0.88	+0.3
3,439,590	+				-0.8
3,439,591	-				-0.2
3,439,591	-				+0.4
3,439,594	-				+0.9
3,439,635	+				-1.4
3,439,635	+				+0.9
3,439,635	+				+0.9
3,439,636	-				-0.0
3,439,638	+				+1.7
3,439,638	+				-0.2
3,439,638	+				+0.0
3,439,639	-				-0.1
3,439,694	+				-0.5
3,439,980	-	pyrD	HEPCGN_23225	0.34	-2.1
3,440,045	+	pyrD	HEPCGN_23225	0.41	-0.5
3,440,125	-	pyrD	HEPCGN_23225	0.49	-0.0
3,440,147	+	pyrD	HEPCGN_23225	0.51	-0.6
3,440,259	-	pyrD	HEPCGN_23225	0.62	-1.3
3,440,262	+	pyrD	HEPCGN_23225	0.62	-1.2
3,440,346	-	pyrD	HEPCGN_23225	0.71	+0.5
3,440,428	+	pyrD	HEPCGN_23225	0.79	-0.2
3,440,664	+				+0.1
3,440,671	+				-0.2
3,440,705	-				+1.3
3,440,706	+				-1.3
3,440,797	+				-1.6
3,441,021	+	zapC	HEPCGN_23230	0.38	+0.7
3,441,025	+	zapC	HEPCGN_23230	0.38	-1.6
3,441,052	+	zapC	HEPCGN_23230	0.43	-1.0
3,441,226	-	zapC	HEPCGN_23230	0.76	+1.6
3,441,369	+				+1.4
3,441,369	+				+1.1
3,441,370	-				-0.9
3,441,370	-				+0.6
3,441,394	-				-0.4
3,441,556	-	ycbX	HEPCGN_23235	0.18	+1.6
3,441,589	-	ycbX	HEPCGN_23235	0.21	+1.2
3,441,592	+	ycbX	HEPCGN_23235	0.21	+0.3
3,441,593	-	ycbX	HEPCGN_23235	0.21	+0.1