Strain Fitness in Escherichia coli ECOR38 around HEPCGN_17235

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttdcA and tdcB are separated by 98 nucleotidestdcB and tdcC are separated by 21 nucleotides HEPCGN_17230: tdcA - transcriptional regulator TdcA, at 2,191,116 to 2,192,054 tdcA HEPCGN_17235: tdcB - bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB, at 2,192,153 to 2,193,142 tdcB HEPCGN_17240: tdcC - threonine/serine transporter TdcC, at 2,193,164 to 2,194,495 tdcC Position (kb) 2192 2193 2194Strain fitness (log2 ratio) -2 -1 0 1 2at 2191.257 kb on + strand, within tdcAat 2191.506 kb on + strand, within tdcAat 2191.576 kb on + strand, within tdcAat 2191.649 kb on + strand, within tdcAat 2191.650 kb on - strand, within tdcAat 2191.650 kb on - strand, within tdcAat 2191.722 kb on - strand, within tdcAat 2191.722 kb on - strand, within tdcAat 2191.748 kb on + strand, within tdcAat 2191.749 kb on - strand, within tdcAat 2191.751 kb on + strand, within tdcAat 2191.751 kb on + strand, within tdcAat 2191.752 kb on - strand, within tdcAat 2191.965 kb on - strandat 2192.125 kb on + strandat 2192.161 kb on + strandat 2192.609 kb on + strand, within tdcBat 2192.673 kb on - strand, within tdcBat 2192.741 kb on - strand, within tdcBat 2192.747 kb on - strand, within tdcBat 2193.050 kb on + strandat 2193.051 kb on - strandat 2193.163 kb on + strandat 2193.163 kb on + strandat 2193.187 kb on - strandat 2193.217 kb on + strandat 2193.226 kb on + strandat 2193.506 kb on + strand, within tdcCat 2193.506 kb on + strand, within tdcCat 2193.515 kb on - strand, within tdcCat 2193.517 kb on + strand, within tdcCat 2193.517 kb on + strand, within tdcCat 2193.518 kb on - strand, within tdcCat 2193.526 kb on + strand, within tdcCat 2193.527 kb on - strand, within tdcCat 2193.533 kb on - strand, within tdcCat 2193.647 kb on - strand, within tdcCat 2193.676 kb on + strand, within tdcCat 2193.866 kb on - strand, within tdcCat 2193.878 kb on + strand, within tdcCat 2193.879 kb on - strand, within tdcCat 2193.913 kb on + strand, within tdcCat 2193.914 kb on - strand, within tdcCat 2193.980 kb on - strand, within tdcC

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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2,191,257 + tdcA HEPCGN_17230 0.15 -0.6
2,191,506 + tdcA HEPCGN_17230 0.42 +0.2
2,191,576 + tdcA HEPCGN_17230 0.49 +1.2
2,191,649 + tdcA HEPCGN_17230 0.57 -0.8
2,191,650 - tdcA HEPCGN_17230 0.57 -0.3
2,191,650 - tdcA HEPCGN_17230 0.57 +1.2
2,191,722 - tdcA HEPCGN_17230 0.65 -0.1
2,191,722 - tdcA HEPCGN_17230 0.65 +1.0
2,191,748 + tdcA HEPCGN_17230 0.67 -0.3
2,191,749 - tdcA HEPCGN_17230 0.67 +1.2
2,191,751 + tdcA HEPCGN_17230 0.68 -0.8
2,191,751 + tdcA HEPCGN_17230 0.68 -0.8
2,191,752 - tdcA HEPCGN_17230 0.68 -0.5
2,191,965 - -0.2
2,192,125 + -0.8
2,192,161 + +0.0
2,192,609 + tdcB HEPCGN_17235 0.46 -1.1
2,192,673 - tdcB HEPCGN_17235 0.53 -0.2
2,192,741 - tdcB HEPCGN_17235 0.59 -1.6
2,192,747 - tdcB HEPCGN_17235 0.60 -0.4
2,193,050 + -1.8
2,193,051 - +0.0
2,193,163 + -0.3
2,193,163 + -0.1
2,193,187 - +1.1
2,193,217 + -0.9
2,193,226 + -2.5
2,193,506 + tdcC HEPCGN_17240 0.26 +0.1
2,193,506 + tdcC HEPCGN_17240 0.26 -0.5
2,193,515 - tdcC HEPCGN_17240 0.26 +2.0
2,193,517 + tdcC HEPCGN_17240 0.27 -0.9
2,193,517 + tdcC HEPCGN_17240 0.27 -0.4
2,193,518 - tdcC HEPCGN_17240 0.27 -0.3
2,193,526 + tdcC HEPCGN_17240 0.27 +0.0
2,193,527 - tdcC HEPCGN_17240 0.27 -1.0
2,193,533 - tdcC HEPCGN_17240 0.28 -1.2
2,193,647 - tdcC HEPCGN_17240 0.36 -0.0
2,193,676 + tdcC HEPCGN_17240 0.38 +0.8
2,193,866 - tdcC HEPCGN_17240 0.53 -0.6
2,193,878 + tdcC HEPCGN_17240 0.54 -0.8
2,193,879 - tdcC HEPCGN_17240 0.54 -0.0
2,193,913 + tdcC HEPCGN_17240 0.56 +1.0
2,193,914 - tdcC HEPCGN_17240 0.56 -0.7
2,193,980 - tdcC HEPCGN_17240 0.61 +0.5

Or see this region's nucleotide sequence