Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tdcA and tdcB are separated by 98 nucleotides tdcB and tdcC are separated by 21 nucleotides
HEPCGN_17230: tdcA - transcriptional regulator TdcA, at 2,191,116 to 2,192,054
tdcA
HEPCGN_17235: tdcB - bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB, at 2,192,153 to 2,193,142
tdcB
HEPCGN_17240: tdcC - threonine/serine transporter TdcC, at 2,193,164 to 2,194,495
tdcC
Position (kb)
2192
2193
2194 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2191.257 kb on + strand, within tdcA at 2191.506 kb on + strand, within tdcA at 2191.576 kb on + strand, within tdcA at 2191.649 kb on + strand, within tdcA at 2191.650 kb on - strand, within tdcA at 2191.650 kb on - strand, within tdcA at 2191.722 kb on - strand, within tdcA at 2191.722 kb on - strand, within tdcA at 2191.748 kb on + strand, within tdcA at 2191.749 kb on - strand, within tdcA at 2191.751 kb on + strand, within tdcA at 2191.751 kb on + strand, within tdcA at 2191.752 kb on - strand, within tdcA at 2191.965 kb on - strand at 2192.125 kb on + strand at 2192.161 kb on + strand at 2192.609 kb on + strand, within tdcB at 2192.673 kb on - strand, within tdcB at 2192.741 kb on - strand, within tdcB at 2192.747 kb on - strand, within tdcB at 2193.050 kb on + strand at 2193.051 kb on - strand at 2193.163 kb on + strand at 2193.163 kb on + strand at 2193.187 kb on - strand at 2193.217 kb on + strand at 2193.226 kb on + strand at 2193.506 kb on + strand, within tdcC at 2193.506 kb on + strand, within tdcC at 2193.515 kb on - strand, within tdcC at 2193.517 kb on + strand, within tdcC at 2193.517 kb on + strand, within tdcC at 2193.518 kb on - strand, within tdcC at 2193.526 kb on + strand, within tdcC at 2193.527 kb on - strand, within tdcC at 2193.533 kb on - strand, within tdcC at 2193.647 kb on - strand, within tdcC at 2193.676 kb on + strand, within tdcC at 2193.866 kb on - strand, within tdcC at 2193.878 kb on + strand, within tdcC at 2193.879 kb on - strand, within tdcC at 2193.913 kb on + strand, within tdcC at 2193.914 kb on - strand, within tdcC at 2193.980 kb on - strand, within tdcC
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 2,191,257 + tdcA HEPCGN_17230 0.15 -0.6 2,191,506 + tdcA HEPCGN_17230 0.42 +0.2 2,191,576 + tdcA HEPCGN_17230 0.49 +1.2 2,191,649 + tdcA HEPCGN_17230 0.57 -0.8 2,191,650 - tdcA HEPCGN_17230 0.57 -0.3 2,191,650 - tdcA HEPCGN_17230 0.57 +1.2 2,191,722 - tdcA HEPCGN_17230 0.65 -0.1 2,191,722 - tdcA HEPCGN_17230 0.65 +1.0 2,191,748 + tdcA HEPCGN_17230 0.67 -0.3 2,191,749 - tdcA HEPCGN_17230 0.67 +1.2 2,191,751 + tdcA HEPCGN_17230 0.68 -0.8 2,191,751 + tdcA HEPCGN_17230 0.68 -0.8 2,191,752 - tdcA HEPCGN_17230 0.68 -0.5 2,191,965 - -0.2 2,192,125 + -0.8 2,192,161 + +0.0 2,192,609 + tdcB HEPCGN_17235 0.46 -1.1 2,192,673 - tdcB HEPCGN_17235 0.53 -0.2 2,192,741 - tdcB HEPCGN_17235 0.59 -1.6 2,192,747 - tdcB HEPCGN_17235 0.60 -0.4 2,193,050 + -1.8 2,193,051 - +0.0 2,193,163 + -0.3 2,193,163 + -0.1 2,193,187 - +1.1 2,193,217 + -0.9 2,193,226 + -2.5 2,193,506 + tdcC HEPCGN_17240 0.26 +0.1 2,193,506 + tdcC HEPCGN_17240 0.26 -0.5 2,193,515 - tdcC HEPCGN_17240 0.26 +2.0 2,193,517 + tdcC HEPCGN_17240 0.27 -0.9 2,193,517 + tdcC HEPCGN_17240 0.27 -0.4 2,193,518 - tdcC HEPCGN_17240 0.27 -0.3 2,193,526 + tdcC HEPCGN_17240 0.27 +0.0 2,193,527 - tdcC HEPCGN_17240 0.27 -1.0 2,193,533 - tdcC HEPCGN_17240 0.28 -1.2 2,193,647 - tdcC HEPCGN_17240 0.36 -0.0 2,193,676 + tdcC HEPCGN_17240 0.38 +0.8 2,193,866 - tdcC HEPCGN_17240 0.53 -0.6 2,193,878 + tdcC HEPCGN_17240 0.54 -0.8 2,193,879 - tdcC HEPCGN_17240 0.54 -0.0 2,193,913 + tdcC HEPCGN_17240 0.56 +1.0 2,193,914 - tdcC HEPCGN_17240 0.56 -0.7 2,193,980 - tdcC HEPCGN_17240 0.61 +0.5
Or see this region's nucleotide sequence