Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntA and yhhN are separated by 73 nucleotides yhhN and yhhM are separated by 140 nucleotides yhhM and yhhL are separated by 2 nucleotides yhhL and rsmD overlap by 11 nucleotides
HEPCGN_15505: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 1,863,411 to 1,865,609
zntA
HEPCGN_15510: yhhN - Uncharacterized membrane protein YhhN, at 1,865,683 to 1,866,309
yhhN
HEPCGN_15515: yhhM - Uncharacterized protein YhhM, at 1,866,450 to 1,866,809
yhhM
HEPCGN_15520: yhhL - DUF1145 domain-containing protein, at 1,866,812 to 1,867,081
yhhL
HEPCGN_15525: rsmD - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 1,867,071 to 1,867,667
rsmD
Position (kb) 1865
1866
1867 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1864.855 kb on - strand, within zntA at 1865.052 kb on + strand, within zntA at 1865.072 kb on - strand, within zntA at 1865.117 kb on - strand, within zntA at 1865.284 kb on + strand, within zntA at 1865.285 kb on - strand, within zntA at 1865.367 kb on + strand, within zntA at 1865.459 kb on + strand at 1865.460 kb on - strand at 1865.460 kb on - strand at 1865.461 kb on + strand at 1865.650 kb on - strand at 1865.682 kb on - strand at 1865.690 kb on + strand at 1865.772 kb on - strand, within yhhN at 1865.797 kb on - strand, within yhhN at 1866.041 kb on + strand, within yhhN at 1866.041 kb on + strand, within yhhN at 1866.078 kb on - strand, within yhhN at 1866.153 kb on - strand, within yhhN at 1866.156 kb on + strand, within yhhN at 1866.157 kb on - strand, within yhhN at 1866.157 kb on - strand, within yhhN at 1866.269 kb on - strand at 1866.295 kb on - strand at 1866.312 kb on + strand at 1866.312 kb on + strand at 1866.353 kb on - strand at 1866.403 kb on - strand at 1866.403 kb on - strand at 1866.403 kb on - strand at 1866.403 kb on - strand at 1866.414 kb on + strand at 1866.415 kb on - strand at 1866.421 kb on - strand at 1866.421 kb on - strand at 1866.638 kb on - strand, within yhhM at 1866.638 kb on - strand, within yhhM at 1866.730 kb on - strand, within yhhM at 1866.768 kb on + strand, within yhhM at 1866.769 kb on - strand, within yhhM at 1866.796 kb on + strand at 1866.946 kb on + strand, within yhhL at 1866.947 kb on - strand, within yhhL at 1867.055 kb on + strand at 1867.070 kb on - strand at 1867.149 kb on + strand, within rsmD at 1867.205 kb on - strand, within rsmD at 1867.263 kb on + strand, within rsmD at 1867.301 kb on + strand, within rsmD at 1867.301 kb on + strand, within rsmD at 1867.304 kb on + strand, within rsmD
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 1,864,855 - zntA HEPCGN_15505 0.66 +0.3 1,865,052 + zntA HEPCGN_15505 0.75 +0.8 1,865,072 - zntA HEPCGN_15505 0.76 +0.4 1,865,117 - zntA HEPCGN_15505 0.78 -0.4 1,865,284 + zntA HEPCGN_15505 0.85 -0.3 1,865,285 - zntA HEPCGN_15505 0.85 -2.0 1,865,367 + zntA HEPCGN_15505 0.89 -1.3 1,865,459 + -0.8 1,865,460 - +0.5 1,865,460 - -2.2 1,865,461 + -1.2 1,865,650 - -2.3 1,865,682 - -0.3 1,865,690 + -1.1 1,865,772 - yhhN HEPCGN_15510 0.14 -0.3 1,865,797 - yhhN HEPCGN_15510 0.18 -1.2 1,866,041 + yhhN HEPCGN_15510 0.57 -1.7 1,866,041 + yhhN HEPCGN_15510 0.57 -0.4 1,866,078 - yhhN HEPCGN_15510 0.63 +0.6 1,866,153 - yhhN HEPCGN_15510 0.75 -1.9 1,866,156 + yhhN HEPCGN_15510 0.75 -0.6 1,866,157 - yhhN HEPCGN_15510 0.76 -2.5 1,866,157 - yhhN HEPCGN_15510 0.76 -1.0 1,866,269 - -0.3 1,866,295 - -0.2 1,866,312 + +0.6 1,866,312 + +0.1 1,866,353 - +0.4 1,866,403 - -1.4 1,866,403 - +1.3 1,866,403 - +0.7 1,866,403 - -0.5 1,866,414 + +1.7 1,866,415 - +0.4 1,866,421 - +3.1 1,866,421 - -0.9 1,866,638 - yhhM HEPCGN_15515 0.52 +1.4 1,866,638 - yhhM HEPCGN_15515 0.52 -1.9 1,866,730 - yhhM HEPCGN_15515 0.78 -1.3 1,866,768 + yhhM HEPCGN_15515 0.88 +0.4 1,866,769 - yhhM HEPCGN_15515 0.89 +0.6 1,866,796 + -0.9 1,866,946 + yhhL HEPCGN_15520 0.50 -1.0 1,866,947 - yhhL HEPCGN_15520 0.50 -0.6 1,867,055 + +0.8 1,867,070 - +1.0 1,867,149 + rsmD HEPCGN_15525 0.13 +2.6 1,867,205 - rsmD HEPCGN_15525 0.22 -0.9 1,867,263 + rsmD HEPCGN_15525 0.32 +0.7 1,867,301 + rsmD HEPCGN_15525 0.39 +0.8 1,867,301 + rsmD HEPCGN_15525 0.39 -0.4 1,867,304 + rsmD HEPCGN_15525 0.39 +0.3
Or see this region's nucleotide sequence