Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fpr and uspD are separated by 4 nucleotides uspD and yfcZ are separated by 26 nucleotides yfcZ and yiiR are separated by 211 nucleotides yiiR and yiiQ are separated by 100 nucleotides
HEPCGN_12430: fpr - ferredoxin--NADP(+) reductase, at 1,236,734 to 1,237,480
fpr
HEPCGN_12435: uspD - universal stress protein UspD, at 1,237,485 to 1,237,913
uspD
HEPCGN_12440: yfcZ - DUF406 domain-containing protein, at 1,237,940 to 1,238,239
yfcZ
HEPCGN_12445: yiiR - Uncharacterized protein YiiR, at 1,238,451 to 1,238,891
yiiR
HEPCGN_12450: yiiQ - Uncharacterized protein YiiQ, at 1,238,992 to 1,239,591
yiiQ
Position (kb)
1237
1238
1239 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1237.041 kb on + strand, within fpr at 1237.042 kb on - strand, within fpr at 1237.094 kb on + strand, within fpr at 1237.095 kb on - strand, within fpr at 1237.095 kb on - strand, within fpr at 1237.179 kb on + strand, within fpr at 1237.180 kb on - strand, within fpr at 1237.180 kb on - strand, within fpr at 1237.184 kb on + strand, within fpr at 1237.185 kb on - strand, within fpr at 1237.185 kb on - strand, within fpr at 1237.297 kb on - strand, within fpr at 1237.457 kb on - strand at 1237.486 kb on + strand at 1237.486 kb on + strand at 1237.490 kb on + strand at 1237.529 kb on + strand, within uspD at 1237.762 kb on + strand, within uspD at 1237.762 kb on + strand, within uspD at 1237.763 kb on - strand, within uspD at 1237.774 kb on + strand, within uspD at 1237.799 kb on + strand, within uspD at 1237.917 kb on + strand at 1237.928 kb on - strand at 1237.928 kb on - strand at 1237.962 kb on - strand at 1237.973 kb on - strand, within yfcZ at 1238.039 kb on - strand, within yfcZ at 1238.045 kb on - strand, within yfcZ at 1238.047 kb on - strand, within yfcZ at 1238.052 kb on - strand, within yfcZ at 1238.110 kb on + strand, within yfcZ at 1238.162 kb on - strand, within yfcZ at 1238.162 kb on - strand, within yfcZ at 1238.209 kb on + strand, within yfcZ at 1238.209 kb on + strand, within yfcZ at 1238.225 kb on + strand at 1238.226 kb on - strand at 1238.252 kb on + strand at 1238.252 kb on + strand at 1238.253 kb on - strand at 1238.255 kb on - strand at 1238.317 kb on - strand at 1238.317 kb on - strand at 1238.325 kb on + strand at 1238.354 kb on + strand at 1238.440 kb on + strand at 1238.442 kb on + strand at 1238.443 kb on - strand at 1238.443 kb on - strand at 1238.446 kb on - strand at 1238.479 kb on + strand at 1238.510 kb on + strand, within yiiR at 1238.627 kb on + strand, within yiiR at 1238.853 kb on - strand at 1238.861 kb on + strand at 1238.862 kb on - strand at 1238.862 kb on - strand at 1238.872 kb on - strand at 1238.884 kb on - strand at 1238.884 kb on - strand at 1238.893 kb on + strand at 1238.894 kb on - strand at 1238.926 kb on + strand at 1238.927 kb on - strand at 1238.974 kb on + strand at 1238.985 kb on - strand at 1239.006 kb on + strand at 1239.023 kb on + strand at 1239.023 kb on + strand at 1239.023 kb on + strand at 1239.024 kb on - strand at 1239.026 kb on - strand at 1239.150 kb on + strand, within yiiQ
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 1,237,041 + fpr HEPCGN_12430 0.41 -0.4 1,237,042 - fpr HEPCGN_12430 0.41 +0.9 1,237,094 + fpr HEPCGN_12430 0.48 +1.1 1,237,095 - fpr HEPCGN_12430 0.48 +0.1 1,237,095 - fpr HEPCGN_12430 0.48 -0.0 1,237,179 + fpr HEPCGN_12430 0.60 -0.5 1,237,180 - fpr HEPCGN_12430 0.60 +1.5 1,237,180 - fpr HEPCGN_12430 0.60 -1.2 1,237,184 + fpr HEPCGN_12430 0.60 -1.1 1,237,185 - fpr HEPCGN_12430 0.60 -0.5 1,237,185 - fpr HEPCGN_12430 0.60 -0.8 1,237,297 - fpr HEPCGN_12430 0.75 -2.1 1,237,457 - -0.4 1,237,486 + +0.4 1,237,486 + +0.4 1,237,490 + +1.7 1,237,529 + uspD HEPCGN_12435 0.10 +0.9 1,237,762 + uspD HEPCGN_12435 0.65 -1.1 1,237,762 + uspD HEPCGN_12435 0.65 +0.7 1,237,763 - uspD HEPCGN_12435 0.65 +0.8 1,237,774 + uspD HEPCGN_12435 0.67 -0.8 1,237,799 + uspD HEPCGN_12435 0.73 +0.5 1,237,917 + +0.3 1,237,928 - -0.2 1,237,928 - -1.2 1,237,962 - -0.2 1,237,973 - yfcZ HEPCGN_12440 0.11 +0.3 1,238,039 - yfcZ HEPCGN_12440 0.33 -1.1 1,238,045 - yfcZ HEPCGN_12440 0.35 -1.4 1,238,047 - yfcZ HEPCGN_12440 0.36 -1.2 1,238,052 - yfcZ HEPCGN_12440 0.37 -0.5 1,238,110 + yfcZ HEPCGN_12440 0.57 -1.4 1,238,162 - yfcZ HEPCGN_12440 0.74 -1.3 1,238,162 - yfcZ HEPCGN_12440 0.74 -0.6 1,238,209 + yfcZ HEPCGN_12440 0.90 -0.9 1,238,209 + yfcZ HEPCGN_12440 0.90 -0.4 1,238,225 + +0.3 1,238,226 - -1.3 1,238,252 + -0.6 1,238,252 + -1.0 1,238,253 - +1.0 1,238,255 - -0.2 1,238,317 - +0.6 1,238,317 - -0.3 1,238,325 + +1.7 1,238,354 + -1.2 1,238,440 + +0.7 1,238,442 + -1.1 1,238,443 - -0.6 1,238,443 - -0.8 1,238,446 - -0.0 1,238,479 + +0.1 1,238,510 + yiiR HEPCGN_12445 0.13 -0.5 1,238,627 + yiiR HEPCGN_12445 0.40 +3.5 1,238,853 - -0.5 1,238,861 + -2.7 1,238,862 - -1.4 1,238,862 - +0.6 1,238,872 - +0.0 1,238,884 - -0.8 1,238,884 - +1.1 1,238,893 + -0.6 1,238,894 - -0.1 1,238,926 + -0.2 1,238,927 - -0.3 1,238,974 + +0.1 1,238,985 - +2.1 1,239,006 + -0.7 1,239,023 + -0.6 1,239,023 + +1.1 1,239,023 + -1.4 1,239,024 - +0.1 1,239,026 - +0.9 1,239,150 + yiiQ HEPCGN_12450 0.26 -0.2
Or see this region's nucleotide sequence