Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12440

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfpr and uspD are separated by 4 nucleotidesuspD and yfcZ are separated by 26 nucleotidesyfcZ and yiiR are separated by 211 nucleotidesyiiR and yiiQ are separated by 100 nucleotides HEPCGN_12430: fpr - ferredoxin--NADP(+) reductase, at 1,236,734 to 1,237,480 fpr HEPCGN_12435: uspD - universal stress protein UspD, at 1,237,485 to 1,237,913 uspD HEPCGN_12440: yfcZ - DUF406 domain-containing protein, at 1,237,940 to 1,238,239 yfcZ HEPCGN_12445: yiiR - Uncharacterized protein YiiR, at 1,238,451 to 1,238,891 yiiR HEPCGN_12450: yiiQ - Uncharacterized protein YiiQ, at 1,238,992 to 1,239,591 yiiQ Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1237.041 kb on + strand, within fprat 1237.042 kb on - strand, within fprat 1237.094 kb on + strand, within fprat 1237.095 kb on - strand, within fprat 1237.095 kb on - strand, within fprat 1237.179 kb on + strand, within fprat 1237.180 kb on - strand, within fprat 1237.180 kb on - strand, within fprat 1237.184 kb on + strand, within fprat 1237.185 kb on - strand, within fprat 1237.185 kb on - strand, within fprat 1237.297 kb on - strand, within fprat 1237.457 kb on - strandat 1237.486 kb on + strandat 1237.486 kb on + strandat 1237.490 kb on + strandat 1237.529 kb on + strand, within uspDat 1237.762 kb on + strand, within uspDat 1237.762 kb on + strand, within uspDat 1237.763 kb on - strand, within uspDat 1237.774 kb on + strand, within uspDat 1237.799 kb on + strand, within uspDat 1237.917 kb on + strandat 1237.928 kb on - strandat 1237.928 kb on - strandat 1237.962 kb on - strandat 1237.973 kb on - strand, within yfcZat 1238.039 kb on - strand, within yfcZat 1238.045 kb on - strand, within yfcZat 1238.047 kb on - strand, within yfcZat 1238.052 kb on - strand, within yfcZat 1238.110 kb on + strand, within yfcZat 1238.162 kb on - strand, within yfcZat 1238.162 kb on - strand, within yfcZat 1238.209 kb on + strand, within yfcZat 1238.209 kb on + strand, within yfcZat 1238.225 kb on + strandat 1238.226 kb on - strandat 1238.252 kb on + strandat 1238.252 kb on + strandat 1238.253 kb on - strandat 1238.255 kb on - strandat 1238.317 kb on - strandat 1238.317 kb on - strandat 1238.325 kb on + strandat 1238.354 kb on + strandat 1238.440 kb on + strandat 1238.442 kb on + strandat 1238.443 kb on - strandat 1238.443 kb on - strandat 1238.446 kb on - strandat 1238.479 kb on + strandat 1238.510 kb on + strand, within yiiRat 1238.627 kb on + strand, within yiiRat 1238.853 kb on - strandat 1238.861 kb on + strandat 1238.862 kb on - strandat 1238.862 kb on - strandat 1238.872 kb on - strandat 1238.884 kb on - strandat 1238.884 kb on - strandat 1238.893 kb on + strandat 1238.894 kb on - strandat 1238.926 kb on + strandat 1238.927 kb on - strandat 1238.974 kb on + strandat 1238.985 kb on - strandat 1239.006 kb on + strandat 1239.023 kb on + strandat 1239.023 kb on + strandat 1239.023 kb on + strandat 1239.024 kb on - strandat 1239.026 kb on - strandat 1239.150 kb on + strand, within yiiQ

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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1,237,041 + fpr HEPCGN_12430 0.41 -0.4
1,237,042 - fpr HEPCGN_12430 0.41 +0.9
1,237,094 + fpr HEPCGN_12430 0.48 +1.1
1,237,095 - fpr HEPCGN_12430 0.48 +0.1
1,237,095 - fpr HEPCGN_12430 0.48 -0.0
1,237,179 + fpr HEPCGN_12430 0.60 -0.5
1,237,180 - fpr HEPCGN_12430 0.60 +1.5
1,237,180 - fpr HEPCGN_12430 0.60 -1.2
1,237,184 + fpr HEPCGN_12430 0.60 -1.1
1,237,185 - fpr HEPCGN_12430 0.60 -0.5
1,237,185 - fpr HEPCGN_12430 0.60 -0.8
1,237,297 - fpr HEPCGN_12430 0.75 -2.1
1,237,457 - -0.4
1,237,486 + +0.4
1,237,486 + +0.4
1,237,490 + +1.7
1,237,529 + uspD HEPCGN_12435 0.10 +0.9
1,237,762 + uspD HEPCGN_12435 0.65 -1.1
1,237,762 + uspD HEPCGN_12435 0.65 +0.7
1,237,763 - uspD HEPCGN_12435 0.65 +0.8
1,237,774 + uspD HEPCGN_12435 0.67 -0.8
1,237,799 + uspD HEPCGN_12435 0.73 +0.5
1,237,917 + +0.3
1,237,928 - -0.2
1,237,928 - -1.2
1,237,962 - -0.2
1,237,973 - yfcZ HEPCGN_12440 0.11 +0.3
1,238,039 - yfcZ HEPCGN_12440 0.33 -1.1
1,238,045 - yfcZ HEPCGN_12440 0.35 -1.4
1,238,047 - yfcZ HEPCGN_12440 0.36 -1.2
1,238,052 - yfcZ HEPCGN_12440 0.37 -0.5
1,238,110 + yfcZ HEPCGN_12440 0.57 -1.4
1,238,162 - yfcZ HEPCGN_12440 0.74 -1.3
1,238,162 - yfcZ HEPCGN_12440 0.74 -0.6
1,238,209 + yfcZ HEPCGN_12440 0.90 -0.9
1,238,209 + yfcZ HEPCGN_12440 0.90 -0.4
1,238,225 + +0.3
1,238,226 - -1.3
1,238,252 + -0.6
1,238,252 + -1.0
1,238,253 - +1.0
1,238,255 - -0.2
1,238,317 - +0.6
1,238,317 - -0.3
1,238,325 + +1.7
1,238,354 + -1.2
1,238,440 + +0.7
1,238,442 + -1.1
1,238,443 - -0.6
1,238,443 - -0.8
1,238,446 - -0.0
1,238,479 + +0.1
1,238,510 + yiiR HEPCGN_12445 0.13 -0.5
1,238,627 + yiiR HEPCGN_12445 0.40 +3.5
1,238,853 - -0.5
1,238,861 + -2.7
1,238,862 - -1.4
1,238,862 - +0.6
1,238,872 - +0.0
1,238,884 - -0.8
1,238,884 - +1.1
1,238,893 + -0.6
1,238,894 - -0.1
1,238,926 + -0.2
1,238,927 - -0.3
1,238,974 + +0.1
1,238,985 - +2.1
1,239,006 + -0.7
1,239,023 + -0.6
1,239,023 + +1.1
1,239,023 + -1.4
1,239,024 - +0.1
1,239,026 - +0.9
1,239,150 + yiiQ HEPCGN_12450 0.26 -0.2

Or see this region's nucleotide sequence