Strain Fitness in Escherichia coli ECOR38 around HEPCGN_11285

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphnF and phnG are separated by 0 nucleotidesphnG and phnH overlap by 4 nucleotidesphnH and phnI overlap by 1 nucleotides HEPCGN_11275: phnF - phosphonate metabolism transcriptional regulator PhnF, at 994,884 to 995,609 phnF HEPCGN_11280: phnG - phosphonate C-P lyase system protein PhnG, at 995,610 to 996,062 phnG HEPCGN_11285: phnH - phosphonate C-P lyase system protein PhnH, at 996,059 to 996,643 phnH HEPCGN_11290: phnI - alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 996,643 to 997,707 phnI Position (kb) 996 997Strain fitness (log2 ratio) -1 0 1 2 3at 995.318 kb on - strand, within phnFat 995.328 kb on + strand, within phnFat 995.329 kb on - strand, within phnFat 995.492 kb on + strand, within phnFat 995.493 kb on - strand, within phnFat 995.850 kb on + strand, within phnGat 995.979 kb on - strand, within phnGat 996.079 kb on + strandat 996.079 kb on + strandat 996.123 kb on + strand, within phnHat 996.261 kb on + strand, within phnHat 996.262 kb on - strand, within phnHat 996.646 kb on + strandat 996.646 kb on + strandat 996.647 kb on - strandat 996.647 kb on - strandat 996.647 kb on - strandat 996.766 kb on - strand, within phnIat 996.777 kb on - strand, within phnIat 996.954 kb on + strand, within phnIat 996.967 kb on + strand, within phnIat 996.970 kb on - strand, within phnIat 996.975 kb on + strand, within phnIat 997.007 kb on - strand, within phnIat 997.012 kb on + strand, within phnIat 997.012 kb on + strand, within phnIat 997.012 kb on + strand, within phnIat 997.195 kb on + strand, within phnIat 997.229 kb on + strand, within phnIat 997.267 kb on + strand, within phnIat 997.420 kb on - strand, within phnIat 997.523 kb on + strand, within phnI

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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995,318 - phnF HEPCGN_11275 0.60 -0.2
995,328 + phnF HEPCGN_11275 0.61 +1.3
995,329 - phnF HEPCGN_11275 0.61 -0.2
995,492 + phnF HEPCGN_11275 0.84 -0.3
995,493 - phnF HEPCGN_11275 0.84 -1.5
995,850 + phnG HEPCGN_11280 0.53 +1.2
995,979 - phnG HEPCGN_11280 0.81 +2.7
996,079 + +1.3
996,079 + -0.4
996,123 + phnH HEPCGN_11285 0.11 -1.4
996,261 + phnH HEPCGN_11285 0.35 -1.3
996,262 - phnH HEPCGN_11285 0.35 -1.4
996,646 + +2.8
996,646 + -0.3
996,647 - +0.9
996,647 - +0.8
996,647 - -0.8
996,766 - phnI HEPCGN_11290 0.12 +0.3
996,777 - phnI HEPCGN_11290 0.13 +1.4
996,954 + phnI HEPCGN_11290 0.29 -1.2
996,967 + phnI HEPCGN_11290 0.30 +0.5
996,970 - phnI HEPCGN_11290 0.31 +0.2
996,975 + phnI HEPCGN_11290 0.31 +1.9
997,007 - phnI HEPCGN_11290 0.34 +0.5
997,012 + phnI HEPCGN_11290 0.35 +1.6
997,012 + phnI HEPCGN_11290 0.35 +0.2
997,012 + phnI HEPCGN_11290 0.35 -1.2
997,195 + phnI HEPCGN_11290 0.52 +0.2
997,229 + phnI HEPCGN_11290 0.55 -0.4
997,267 + phnI HEPCGN_11290 0.59 +2.7
997,420 - phnI HEPCGN_11290 0.73 -0.0
997,523 + phnI HEPCGN_11290 0.83 -0.3

Or see this region's nucleotide sequence