Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeS and HEPCGN_11070 are separated by 62 nucleotides HEPCGN_11070 and HEPCGN_11075 overlap by 1 nucleotides HEPCGN_11075 and cbtA are separated by 49 nucleotides cbtA and HEPCGN_11085 are separated by 89 nucleotides HEPCGN_11085 and HEPCGN_11090 overlap by 4 nucleotides HEPCGN_11090 and HEPCGN_11095 are separated by 305 nucleotides
HEPCGN_11065: yeeS - UPF0758 protein YeeS, at 952,045 to 952,521
yeeS
HEPCGN_11070: HEPCGN_11070 - DUF987 domain-containing protein, at 952,584 to 952,805
_11070
HEPCGN_11075: HEPCGN_11075 - Phage-related protein, at 952,805 to 952,918
_11075
HEPCGN_11080: cbtA - type IV toxin-antitoxin system toxin CbtA, at 952,968 to 953,336
cbtA
HEPCGN_11085: HEPCGN_11085 - toxin, at 953,426 to 953,800
_11085
HEPCGN_11090: HEPCGN_11090 - DUF5983 domain-containing protein, at 953,797 to 954,285
_11090
HEPCGN_11095: HEPCGN_11095 - DUF4942 domain-containing protein, at 954,591 to 955,160
_11095
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.668 kb on + strand, within HEPCGN_11070 at 952.695 kb on + strand, within HEPCGN_11070 at 952.695 kb on + strand, within HEPCGN_11070 at 952.696 kb on - strand, within HEPCGN_11070 at 952.696 kb on - strand, within HEPCGN_11070 at 952.696 kb on - strand, within HEPCGN_11070 at 952.773 kb on + strand, within HEPCGN_11070 at 952.875 kb on + strand, within HEPCGN_11075 at 952.931 kb on - strand at 952.964 kb on + strand at 953.095 kb on - strand, within cbtA at 953.581 kb on + strand, within HEPCGN_11085 at 953.699 kb on - strand, within HEPCGN_11085 at 953.699 kb on - strand, within HEPCGN_11085 at 953.764 kb on + strand at 953.764 kb on + strand at 953.779 kb on + strand at 953.972 kb on + strand, within HEPCGN_11090 at 954.019 kb on - strand, within HEPCGN_11090 at 954.019 kb on - strand, within HEPCGN_11090 at 954.120 kb on - strand, within HEPCGN_11090 at 954.120 kb on - strand, within HEPCGN_11090 at 954.283 kb on + strand at 954.377 kb on + strand at 954.378 kb on - strand at 954.378 kb on - strand at 954.590 kb on + strand at 954.687 kb on - strand, within HEPCGN_11095 at 954.687 kb on - strand, within HEPCGN_11095
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 952,668 + HEPCGN_11070 0.38 -0.5 952,695 + HEPCGN_11070 0.50 -1.3 952,695 + HEPCGN_11070 0.50 +0.8 952,696 - HEPCGN_11070 0.50 +0.0 952,696 - HEPCGN_11070 0.50 -0.8 952,696 - HEPCGN_11070 0.50 +0.0 952,773 + HEPCGN_11070 0.85 +0.3 952,875 + HEPCGN_11075 0.61 +0.7 952,931 - +1.4 952,964 + +0.5 953,095 - cbtA HEPCGN_11080 0.34 +0.1 953,581 + HEPCGN_11085 0.41 -1.7 953,699 - HEPCGN_11085 0.73 -0.9 953,699 - HEPCGN_11085 0.73 +0.1 953,764 + +2.3 953,764 + -1.4 953,779 + +0.2 953,972 + HEPCGN_11090 0.36 -0.7 954,019 - HEPCGN_11090 0.45 +0.6 954,019 - HEPCGN_11090 0.45 -2.2 954,120 - HEPCGN_11090 0.66 +2.3 954,120 - HEPCGN_11090 0.66 +0.5 954,283 + -1.7 954,377 + -0.1 954,378 - +1.3 954,378 - +0.7 954,590 + -0.4 954,687 - HEPCGN_11095 0.17 +0.1 954,687 - HEPCGN_11095 0.17 +1.8
Or see this region's nucleotide sequence