Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt herA and HEPCGN_09710 are separated by 7 nucleotides HEPCGN_09710 and sPS1 overlap by 4 nucleotides
HEPCGN_09705: herA - nucleoside triphosphate hydrolase, at 687,585 to 689,270
herA
HEPCGN_09710: HEPCGN_09710 - hypothetical protein, at 689,278 to 689,820
_09710
HEPCGN_09715: sPS1 - serine/threonine protein kinase, at 689,817 to 691,286
sPS1
Position (kb) 689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 688.339 kb on - strand, within herA at 688.361 kb on + strand, within herA at 688.362 kb on - strand, within herA at 688.362 kb on - strand, within herA at 688.367 kb on + strand, within herA at 688.372 kb on - strand, within herA at 688.372 kb on - strand, within herA at 688.439 kb on - strand, within herA at 688.526 kb on + strand, within herA at 688.527 kb on - strand, within herA at 688.527 kb on - strand, within herA at 688.547 kb on - strand, within herA at 688.550 kb on - strand, within herA at 688.559 kb on + strand, within herA at 688.570 kb on + strand, within herA at 688.681 kb on - strand, within herA at 688.710 kb on - strand, within herA at 688.754 kb on - strand, within herA at 688.768 kb on + strand, within herA at 688.791 kb on - strand, within herA at 688.813 kb on + strand, within herA at 688.813 kb on + strand, within herA at 688.871 kb on + strand, within herA at 688.872 kb on - strand, within herA at 688.893 kb on - strand, within herA at 688.938 kb on - strand, within herA at 689.008 kb on + strand, within herA at 689.037 kb on - strand, within herA at 689.081 kb on + strand, within herA at 689.083 kb on + strand, within herA at 689.084 kb on - strand, within herA at 689.087 kb on + strand, within herA at 689.088 kb on - strand, within herA at 689.088 kb on - strand, within herA at 689.088 kb on - strand, within herA at 689.138 kb on - strand at 689.201 kb on + strand at 689.202 kb on - strand at 689.202 kb on - strand at 689.202 kb on - strand at 689.205 kb on - strand at 689.205 kb on - strand at 689.278 kb on - strand at 689.297 kb on + strand at 689.348 kb on + strand, within HEPCGN_09710 at 689.348 kb on + strand, within HEPCGN_09710 at 689.348 kb on + strand, within HEPCGN_09710 at 689.364 kb on - strand, within HEPCGN_09710 at 689.382 kb on + strand, within HEPCGN_09710 at 689.406 kb on + strand, within HEPCGN_09710 at 689.643 kb on - strand, within HEPCGN_09710 at 689.678 kb on + strand, within HEPCGN_09710 at 689.678 kb on + strand, within HEPCGN_09710 at 689.679 kb on - strand, within HEPCGN_09710 at 689.679 kb on - strand, within HEPCGN_09710 at 689.679 kb on - strand, within HEPCGN_09710 at 689.695 kb on - strand, within HEPCGN_09710 at 689.874 kb on + strand at 690.008 kb on + strand, within sPS1 at 690.019 kb on + strand, within sPS1 at 690.020 kb on - strand, within sPS1 at 690.042 kb on - strand, within sPS1 at 690.071 kb on - strand, within sPS1 at 690.074 kb on + strand, within sPS1 at 690.075 kb on - strand, within sPS1 at 690.088 kb on - strand, within sPS1 at 690.090 kb on - strand, within sPS1 at 690.149 kb on + strand, within sPS1 at 690.149 kb on + strand, within sPS1 at 690.186 kb on + strand, within sPS1 at 690.232 kb on + strand, within sPS1 at 690.254 kb on + strand, within sPS1 at 690.427 kb on + strand, within sPS1 at 690.430 kb on + strand, within sPS1 at 690.431 kb on - strand, within sPS1 at 690.445 kb on - strand, within sPS1 at 690.445 kb on - strand, within sPS1 at 690.446 kb on + strand, within sPS1 at 690.452 kb on - strand, within sPS1 at 690.452 kb on - strand, within sPS1 at 690.498 kb on - strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.552 kb on - strand, within sPS1 at 690.587 kb on + strand, within sPS1 at 690.596 kb on - strand, within sPS1 at 690.686 kb on + strand, within sPS1 at 690.687 kb on - strand, within sPS1 at 690.707 kb on + strand, within sPS1 at 690.762 kb on + strand, within sPS1
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 688,339 - herA HEPCGN_09705 0.45 +0.8 688,361 + herA HEPCGN_09705 0.46 +2.2 688,362 - herA HEPCGN_09705 0.46 -0.4 688,362 - herA HEPCGN_09705 0.46 +0.8 688,367 + herA HEPCGN_09705 0.46 -2.9 688,372 - herA HEPCGN_09705 0.47 -0.8 688,372 - herA HEPCGN_09705 0.47 -1.5 688,439 - herA HEPCGN_09705 0.51 -0.7 688,526 + herA HEPCGN_09705 0.56 -1.3 688,527 - herA HEPCGN_09705 0.56 -1.1 688,527 - herA HEPCGN_09705 0.56 -0.1 688,547 - herA HEPCGN_09705 0.57 -1.1 688,550 - herA HEPCGN_09705 0.57 +0.3 688,559 + herA HEPCGN_09705 0.58 -0.4 688,570 + herA HEPCGN_09705 0.58 +0.1 688,681 - herA HEPCGN_09705 0.65 -2.2 688,710 - herA HEPCGN_09705 0.67 +0.6 688,754 - herA HEPCGN_09705 0.69 -0.4 688,768 + herA HEPCGN_09705 0.70 -0.3 688,791 - herA HEPCGN_09705 0.72 -1.8 688,813 + herA HEPCGN_09705 0.73 +0.3 688,813 + herA HEPCGN_09705 0.73 -0.2 688,871 + herA HEPCGN_09705 0.76 -0.8 688,872 - herA HEPCGN_09705 0.76 +2.7 688,893 - herA HEPCGN_09705 0.78 +1.1 688,938 - herA HEPCGN_09705 0.80 +1.4 689,008 + herA HEPCGN_09705 0.84 -0.6 689,037 - herA HEPCGN_09705 0.86 +0.6 689,081 + herA HEPCGN_09705 0.89 +0.5 689,083 + herA HEPCGN_09705 0.89 +1.3 689,084 - herA HEPCGN_09705 0.89 -1.9 689,087 + herA HEPCGN_09705 0.89 -0.5 689,088 - herA HEPCGN_09705 0.89 +0.8 689,088 - herA HEPCGN_09705 0.89 +0.7 689,088 - herA HEPCGN_09705 0.89 +1.6 689,138 - -1.3 689,201 + -0.6 689,202 - -0.0 689,202 - -1.2 689,202 - -0.6 689,205 - +0.1 689,205 - -1.2 689,278 - +0.4 689,297 + +0.1 689,348 + HEPCGN_09710 0.13 +0.2 689,348 + HEPCGN_09710 0.13 +0.7 689,348 + HEPCGN_09710 0.13 +0.6 689,364 - HEPCGN_09710 0.16 -0.2 689,382 + HEPCGN_09710 0.19 -0.5 689,406 + HEPCGN_09710 0.24 -0.5 689,643 - HEPCGN_09710 0.67 +0.5 689,678 + HEPCGN_09710 0.74 -0.2 689,678 + HEPCGN_09710 0.74 -0.3 689,679 - HEPCGN_09710 0.74 +1.0 689,679 - HEPCGN_09710 0.74 +0.1 689,679 - HEPCGN_09710 0.74 +1.2 689,695 - HEPCGN_09710 0.77 -0.1 689,874 + +0.5 690,008 + sPS1 HEPCGN_09715 0.13 +0.1 690,019 + sPS1 HEPCGN_09715 0.14 +1.6 690,020 - sPS1 HEPCGN_09715 0.14 +1.3 690,042 - sPS1 HEPCGN_09715 0.15 -1.3 690,071 - sPS1 HEPCGN_09715 0.17 -1.8 690,074 + sPS1 HEPCGN_09715 0.17 -2.2 690,075 - sPS1 HEPCGN_09715 0.18 -1.4 690,088 - sPS1 HEPCGN_09715 0.18 -0.5 690,090 - sPS1 HEPCGN_09715 0.19 +0.1 690,149 + sPS1 HEPCGN_09715 0.23 +0.6 690,149 + sPS1 HEPCGN_09715 0.23 +0.7 690,186 + sPS1 HEPCGN_09715 0.25 -0.6 690,232 + sPS1 HEPCGN_09715 0.28 -0.4 690,254 + sPS1 HEPCGN_09715 0.30 -0.3 690,427 + sPS1 HEPCGN_09715 0.41 +1.0 690,430 + sPS1 HEPCGN_09715 0.42 -1.9 690,431 - sPS1 HEPCGN_09715 0.42 -0.6 690,445 - sPS1 HEPCGN_09715 0.43 +1.0 690,445 - sPS1 HEPCGN_09715 0.43 +0.9 690,446 + sPS1 HEPCGN_09715 0.43 +0.4 690,452 - sPS1 HEPCGN_09715 0.43 +1.1 690,452 - sPS1 HEPCGN_09715 0.43 +2.1 690,498 - sPS1 HEPCGN_09715 0.46 -1.4 690,548 + sPS1 HEPCGN_09715 0.50 -0.4 690,548 + sPS1 HEPCGN_09715 0.50 -1.3 690,548 + sPS1 HEPCGN_09715 0.50 -2.0 690,551 + sPS1 HEPCGN_09715 0.50 +0.7 690,551 + sPS1 HEPCGN_09715 0.50 -0.7 690,551 + sPS1 HEPCGN_09715 0.50 -1.4 690,551 + sPS1 HEPCGN_09715 0.50 -0.4 690,551 + sPS1 HEPCGN_09715 0.50 -0.2 690,552 - sPS1 HEPCGN_09715 0.50 -0.0 690,587 + sPS1 HEPCGN_09715 0.52 -1.9 690,596 - sPS1 HEPCGN_09715 0.53 -2.1 690,686 + sPS1 HEPCGN_09715 0.59 +0.9 690,687 - sPS1 HEPCGN_09715 0.59 -1.2 690,707 + sPS1 HEPCGN_09715 0.61 +0.0 690,762 + sPS1 HEPCGN_09715 0.64 +0.3
Or see this region's nucleotide sequence