Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiP and thiQ overlap by 17 nucleotides thiQ and yabI are separated by 81 nucleotides
HEPCGN_08740: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 487,661 to 489,271
thiP
HEPCGN_08745: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 489,255 to 489,953
thiQ
HEPCGN_08750: yabI - Inner membrane protein YabI, at 490,035 to 490,799
yabI
Position (kb) 489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 488.266 kb on + strand, within thiP at 488.272 kb on + strand, within thiP at 488.348 kb on - strand, within thiP at 488.367 kb on - strand, within thiP at 488.541 kb on + strand, within thiP at 488.541 kb on + strand, within thiP at 488.688 kb on + strand, within thiP at 488.688 kb on + strand, within thiP at 488.689 kb on - strand, within thiP at 488.689 kb on - strand, within thiP at 488.698 kb on - strand, within thiP at 488.916 kb on - strand, within thiP at 488.968 kb on + strand, within thiP at 488.968 kb on + strand, within thiP at 488.968 kb on + strand, within thiP at 488.968 kb on + strand, within thiP at 488.968 kb on + strand, within thiP at 488.969 kb on - strand, within thiP at 489.010 kb on - strand, within thiP at 489.141 kb on - strand at 489.146 kb on + strand at 489.165 kb on - strand at 489.195 kb on + strand at 489.195 kb on + strand at 489.273 kb on - strand at 489.425 kb on + strand, within thiQ at 489.614 kb on + strand, within thiQ at 489.620 kb on - strand, within thiQ at 489.859 kb on + strand, within thiQ at 489.891 kb on - strand at 489.935 kb on - strand at 490.030 kb on - strand at 490.037 kb on - strand at 490.067 kb on + strand at 490.069 kb on + strand at 490.070 kb on - strand at 490.070 kb on - strand at 490.168 kb on + strand, within yabI at 490.207 kb on - strand, within yabI at 490.639 kb on - strand, within yabI at 490.678 kb on - strand, within yabI at 490.757 kb on - strand at 490.757 kb on - strand at 490.773 kb on - strand at 490.776 kb on - strand at 490.799 kb on + strand at 490.799 kb on + strand at 490.799 kb on + strand at 490.842 kb on + strand at 490.843 kb on - strand at 490.843 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 488,266 + thiP HEPCGN_08740 0.38 -0.1 488,272 + thiP HEPCGN_08740 0.38 -0.4 488,348 - thiP HEPCGN_08740 0.43 -0.1 488,367 - thiP HEPCGN_08740 0.44 +1.2 488,541 + thiP HEPCGN_08740 0.55 -0.4 488,541 + thiP HEPCGN_08740 0.55 -0.5 488,688 + thiP HEPCGN_08740 0.64 +0.7 488,688 + thiP HEPCGN_08740 0.64 -0.8 488,689 - thiP HEPCGN_08740 0.64 +0.7 488,689 - thiP HEPCGN_08740 0.64 +0.1 488,698 - thiP HEPCGN_08740 0.64 -0.7 488,916 - thiP HEPCGN_08740 0.78 -1.2 488,968 + thiP HEPCGN_08740 0.81 -0.2 488,968 + thiP HEPCGN_08740 0.81 +0.6 488,968 + thiP HEPCGN_08740 0.81 -0.6 488,968 + thiP HEPCGN_08740 0.81 +0.2 488,968 + thiP HEPCGN_08740 0.81 -0.4 488,969 - thiP HEPCGN_08740 0.81 +0.5 489,010 - thiP HEPCGN_08740 0.84 -0.4 489,141 - -0.2 489,146 + -0.4 489,165 - -0.5 489,195 + +1.2 489,195 + -2.5 489,273 - -0.3 489,425 + thiQ HEPCGN_08745 0.24 -1.2 489,614 + thiQ HEPCGN_08745 0.51 -0.6 489,620 - thiQ HEPCGN_08745 0.52 -0.2 489,859 + thiQ HEPCGN_08745 0.86 -0.9 489,891 - -1.0 489,935 - +1.4 490,030 - -0.5 490,037 - +0.8 490,067 + -0.4 490,069 + +1.2 490,070 - +0.7 490,070 - +0.8 490,168 + yabI HEPCGN_08750 0.17 -0.3 490,207 - yabI HEPCGN_08750 0.22 +0.0 490,639 - yabI HEPCGN_08750 0.79 -0.6 490,678 - yabI HEPCGN_08750 0.84 +1.0 490,757 - -0.4 490,757 - +0.3 490,773 - +0.3 490,776 - -0.6 490,799 + +0.1 490,799 + -1.7 490,799 + -1.2 490,842 + +0.4 490,843 - +0.5 490,843 - -0.1 490,848 - -1.7 490,848 - -1.5
Or see this region's nucleotide sequence