Strain Fitness in Escherichia coli ECOR38 around HEPCGN_07140

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecD and yajC are separated by 60 nucleotidesyajC and tgt are separated by 22 nucleotides HEPCGN_07135: secD - Protein translocase subunit SecD, at 158,126 to 159,940 secD HEPCGN_07140: yajC - preprotein translocase subunit YajC, at 160,001 to 160,333 yajC HEPCGN_07145: tgt - tRNA guanosine(34) transglycosylase Tgt, at 160,356 to 161,483 tgt Position (kb) 160 161Strain fitness (log2 ratio) -2 -1 0 1at 160.055 kb on - strand, within yajCat 160.062 kb on - strand, within yajCat 160.349 kb on - strandat 160.355 kb on - strandat 160.358 kb on - strandat 160.471 kb on + strand, within tgtat 160.472 kb on - strand, within tgtat 160.543 kb on + strand, within tgtat 160.544 kb on - strand, within tgtat 160.556 kb on - strand, within tgtat 160.610 kb on + strand, within tgtat 160.610 kb on + strand, within tgtat 160.610 kb on + strand, within tgtat 160.611 kb on - strand, within tgtat 160.717 kb on - strand, within tgtat 160.717 kb on - strand, within tgtat 160.791 kb on + strand, within tgtat 160.791 kb on + strand, within tgtat 160.791 kb on + strand, within tgtat 160.791 kb on + strand, within tgtat 160.792 kb on - strand, within tgtat 160.856 kb on - strand, within tgtat 160.856 kb on - strand, within tgtat 161.049 kb on - strand, within tgtat 161.049 kb on - strand, within tgtat 161.049 kb on - strand, within tgtat 161.246 kb on + strand, within tgt

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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160,055 - yajC HEPCGN_07140 0.16 -1.1
160,062 - yajC HEPCGN_07140 0.18 -0.6
160,349 - +1.2
160,355 - +1.3
160,358 - -1.7
160,471 + tgt HEPCGN_07145 0.10 -0.5
160,472 - tgt HEPCGN_07145 0.10 +0.2
160,543 + tgt HEPCGN_07145 0.17 -1.4
160,544 - tgt HEPCGN_07145 0.17 -1.8
160,556 - tgt HEPCGN_07145 0.18 +0.1
160,610 + tgt HEPCGN_07145 0.23 -0.5
160,610 + tgt HEPCGN_07145 0.23 +0.2
160,610 + tgt HEPCGN_07145 0.23 +0.4
160,611 - tgt HEPCGN_07145 0.23 +1.4
160,717 - tgt HEPCGN_07145 0.32 +0.6
160,717 - tgt HEPCGN_07145 0.32 +0.4
160,791 + tgt HEPCGN_07145 0.39 -0.1
160,791 + tgt HEPCGN_07145 0.39 +1.3
160,791 + tgt HEPCGN_07145 0.39 -1.5
160,791 + tgt HEPCGN_07145 0.39 +0.9
160,792 - tgt HEPCGN_07145 0.39 +1.3
160,856 - tgt HEPCGN_07145 0.44 -0.5
160,856 - tgt HEPCGN_07145 0.44 -0.9
161,049 - tgt HEPCGN_07145 0.61 -0.1
161,049 - tgt HEPCGN_07145 0.61 -0.4
161,049 - tgt HEPCGN_07145 0.61 +1.4
161,246 + tgt HEPCGN_07145 0.79 -0.4

Or see this region's nucleotide sequence