Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_07090 and HEPCGN_07095 overlap by 16 nucleotides HEPCGN_07095 and HEPCGN_07100 are separated by 152 nucleotides HEPCGN_07100 and HEPCGN_07105 are separated by 677 nucleotides
HEPCGN_07090: HEPCGN_07090 - hypothetical protein, at 152,535 to 152,723
_07090
HEPCGN_07095: HEPCGN_07095 - RNA-guided endonuclease TnpB family protein, at 152,708 to 153,514
_07095
HEPCGN_07100: HEPCGN_07100 - Putative virulence protein, at 153,667 to 153,855
_07100
HEPCGN_07105: HEPCGN_07105 - DUF3251 domain-containing protein, at 154,533 to 154,820
_07105
Position (kb) 153
154 Strain fitness (log2 ratio) -1
0
1
2
3 at 152.843 kb on - strand, within HEPCGN_07095 at 152.852 kb on + strand, within HEPCGN_07095 at 152.852 kb on + strand, within HEPCGN_07095 at 152.932 kb on - strand, within HEPCGN_07095 at 152.932 kb on - strand, within HEPCGN_07095 at 153.774 kb on + strand, within HEPCGN_07100 at 154.370 kb on + strand at 154.399 kb on - strand at 154.474 kb on - strand at 154.524 kb on - strand at 154.528 kb on + strand at 154.528 kb on + strand at 154.529 kb on - strand at 154.529 kb on - strand at 154.532 kb on + strand at 154.533 kb on - strand at 154.548 kb on - strand at 154.559 kb on + strand at 154.582 kb on + strand, within HEPCGN_07105 at 154.582 kb on + strand, within HEPCGN_07105 at 154.660 kb on + strand, within HEPCGN_07105 at 154.753 kb on + strand, within HEPCGN_07105 at 154.754 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 152,843 - HEPCGN_07095 0.17 -0.3 152,852 + HEPCGN_07095 0.18 -0.2 152,852 + HEPCGN_07095 0.18 +0.2 152,932 - HEPCGN_07095 0.28 -0.8 152,932 - HEPCGN_07095 0.28 -0.5 153,774 + HEPCGN_07100 0.57 -1.2 154,370 + +1.3 154,399 - -0.4 154,474 - +1.2 154,524 - -0.1 154,528 + +1.1 154,528 + +3.4 154,529 - -1.4 154,529 - +0.6 154,532 + -1.7 154,533 - -0.5 154,548 - +0.7 154,559 + -1.6 154,582 + HEPCGN_07105 0.17 +0.4 154,582 + HEPCGN_07105 0.17 -0.4 154,660 + HEPCGN_07105 0.44 +0.2 154,753 + HEPCGN_07105 0.76 +0.6 154,754 - HEPCGN_07105 0.77 +0.7 154,787 - HEPCGN_07105 0.88 +1.8 154,787 - HEPCGN_07105 0.88 -1.1
Or see this region's nucleotide sequence