Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05440

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfC and HEPCGN_05430 are separated by 96 nucleotidesHEPCGN_05430 and thrS are separated by 53 nucleotidesthrS and pheM are separated by 122 nucleotidespheM and pheS are separated by 138 nucleotides HEPCGN_05425: infC - translation initiation factor IF-3, at 960,788 to 961,222 infC HEPCGN_05430: HEPCGN_05430 - 50S ribosomal protein L35, at 961,319 to 961,516 _05430 HEPCGN_05435: thrS - threonine--tRNA ligase, at 961,570 to 961,926 thrS HEPCGN_05440: pheM - pheST operon leader peptide PheM, at 962,049 to 962,093 pheM HEPCGN_05445: pheS - phenylalanine--tRNA ligase subunit alpha, at 962,232 to 963,215 pheS Position (kb) 962 963Strain fitness (log2 ratio) -2 -1 0 1at 962.028 kb on + strandat 962.079 kb on + strand, within pheM

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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962,028 + -2.6
962,079 + pheM HEPCGN_05440 0.67 -0.5

Or see this region's nucleotide sequence