Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nimR and yeaL overlap by 44 nucleotides yeaL and yeaK are separated by 274 nucleotides yeaK and dgcJ are separated by 42 nucleotides
HEPCGN_05070: nimR - DNA-binding transcriptional regulator NimR, at 887,447 to 888,265
nimR
HEPCGN_05075: yeaL - UPF0756 membrane protein CKO_01811, at 888,222 to 888,668
yeaL
HEPCGN_05080: yeaK - mischarged aminoacyl-tRNA deacylase, at 888,943 to 889,446
yeaK
HEPCGN_05085: dgcJ - diguanylate cyclase DgcJ, at 889,489 to 890,979
dgcJ
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 888.073 kb on - strand, within nimR at 888.083 kb on - strand, within nimR at 888.166 kb on + strand, within nimR at 888.166 kb on + strand, within nimR at 888.170 kb on - strand, within nimR at 888.224 kb on - strand at 888.224 kb on - strand at 888.304 kb on - strand, within yeaL at 888.505 kb on - strand, within yeaL at 888.516 kb on + strand, within yeaL at 888.618 kb on - strand, within yeaL at 888.618 kb on - strand, within yeaL at 888.694 kb on - strand at 888.703 kb on + strand at 888.703 kb on + strand at 888.709 kb on - strand at 888.730 kb on + strand at 888.820 kb on - strand at 888.835 kb on - strand at 888.835 kb on - strand at 888.837 kb on + strand at 888.838 kb on - strand at 888.940 kb on + strand at 888.941 kb on - strand at 888.992 kb on + strand at 889.011 kb on + strand, within yeaK at 889.189 kb on + strand, within yeaK at 889.189 kb on + strand, within yeaK at 889.192 kb on - strand, within yeaK at 889.293 kb on + strand, within yeaK at 889.344 kb on + strand, within yeaK at 889.345 kb on - strand, within yeaK at 889.524 kb on - strand at 889.524 kb on - strand at 889.526 kb on - strand at 889.526 kb on - strand at 889.526 kb on - strand at 889.545 kb on + strand at 889.558 kb on + strand at 889.728 kb on - strand, within dgcJ at 889.814 kb on - strand, within dgcJ at 889.923 kb on - strand, within dgcJ at 890.114 kb on + strand, within dgcJ at 890.157 kb on + strand, within dgcJ at 890.232 kb on - strand, within dgcJ at 890.284 kb on + strand, within dgcJ at 890.285 kb on - strand, within dgcJ at 890.301 kb on - strand, within dgcJ
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 888,073 - nimR HEPCGN_05070 0.76 -0.2 888,083 - nimR HEPCGN_05070 0.78 -0.8 888,166 + nimR HEPCGN_05070 0.88 -2.3 888,166 + nimR HEPCGN_05070 0.88 +0.8 888,170 - nimR HEPCGN_05070 0.88 -0.2 888,224 - -1.0 888,224 - +1.1 888,304 - yeaL HEPCGN_05075 0.18 -0.3 888,505 - yeaL HEPCGN_05075 0.63 +0.1 888,516 + yeaL HEPCGN_05075 0.66 -0.6 888,618 - yeaL HEPCGN_05075 0.89 +0.9 888,618 - yeaL HEPCGN_05075 0.89 -0.0 888,694 - -0.7 888,703 + -1.0 888,703 + -0.3 888,709 - -1.4 888,730 + -0.4 888,820 - -1.1 888,835 - -0.9 888,835 - +0.0 888,837 + -0.9 888,838 - +3.0 888,940 + +0.2 888,941 - -0.8 888,992 + +1.3 889,011 + yeaK HEPCGN_05080 0.13 +0.1 889,189 + yeaK HEPCGN_05080 0.49 -1.1 889,189 + yeaK HEPCGN_05080 0.49 -0.7 889,192 - yeaK HEPCGN_05080 0.49 -1.6 889,293 + yeaK HEPCGN_05080 0.69 -0.2 889,344 + yeaK HEPCGN_05080 0.80 -0.1 889,345 - yeaK HEPCGN_05080 0.80 -1.0 889,524 - -0.9 889,524 - -0.5 889,526 - +0.8 889,526 - -0.6 889,526 - +0.4 889,545 + +0.1 889,558 + -1.9 889,728 - dgcJ HEPCGN_05085 0.16 -2.6 889,814 - dgcJ HEPCGN_05085 0.22 -0.3 889,923 - dgcJ HEPCGN_05085 0.29 -0.2 890,114 + dgcJ HEPCGN_05085 0.42 +1.1 890,157 + dgcJ HEPCGN_05085 0.45 +0.3 890,232 - dgcJ HEPCGN_05085 0.50 +1.0 890,284 + dgcJ HEPCGN_05085 0.53 -1.7 890,285 - dgcJ HEPCGN_05085 0.53 +1.1 890,301 - dgcJ HEPCGN_05085 0.54 +1.7
Or see this region's nucleotide sequence