Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05060

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdgcP and yoaF are separated by 182 nucleotidesyoaF and yeaO are separated by 21 nucleotidesyeaO and nimT are separated by 54 nucleotides HEPCGN_05050: dgcP - diguanylate cyclase DgcP, at 884,280 to 885,305 dgcP HEPCGN_05055: yoaF - DUF333 domain-containing protein, at 885,488 to 885,742 yoaF HEPCGN_05060: yeaO - Uncharacterized protein YeaO, at 885,764 to 886,111 yeaO HEPCGN_05065: nimT - 2-nitroimidazole transporter, at 886,166 to 887,347 nimT Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1 2 3at 884.827 kb on - strand, within dgcPat 884.846 kb on + strand, within dgcPat 884.849 kb on - strand, within dgcPat 884.849 kb on - strand, within dgcPat 884.849 kb on - strand, within dgcPat 884.942 kb on - strand, within dgcPat 884.942 kb on - strand, within dgcPat 884.942 kb on - strand, within dgcPat 885.147 kb on + strand, within dgcPat 885.147 kb on + strand, within dgcPat 885.147 kb on + strand, within dgcPat 885.147 kb on + strand, within dgcPat 885.147 kb on + strand, within dgcPat 885.148 kb on - strand, within dgcPat 885.148 kb on - strand, within dgcPat 885.148 kb on - strand, within dgcPat 885.331 kb on - strandat 885.363 kb on + strandat 885.399 kb on - strandat 885.418 kb on + strandat 885.472 kb on + strandat 885.472 kb on + strandat 885.566 kb on - strand, within yoaFat 885.605 kb on + strand, within yoaFat 885.772 kb on + strandat 885.772 kb on + strandat 885.772 kb on + strandat 885.773 kb on - strandat 885.773 kb on - strandat 885.829 kb on - strand, within yeaOat 886.153 kb on - strandat 886.154 kb on + strandat 886.539 kb on - strand, within nimTat 886.577 kb on + strand, within nimTat 886.666 kb on - strand, within nimTat 886.738 kb on + strand, within nimTat 886.742 kb on + strand, within nimTat 886.742 kb on + strand, within nimTat 886.743 kb on - strand, within nimTat 886.743 kb on - strand, within nimTat 886.926 kb on + strand, within nimTat 886.986 kb on - strand, within nimTat 886.993 kb on + strand, within nimTat 886.993 kb on + strand, within nimTat 886.997 kb on + strand, within nimTat 887.036 kb on + strand, within nimTat 887.039 kb on + strand, within nimTat 887.040 kb on - strand, within nimTat 887.043 kb on + strand, within nimTat 887.107 kb on + strand, within nimT

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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884,827 - dgcP HEPCGN_05050 0.53 +0.6
884,846 + dgcP HEPCGN_05050 0.55 +0.3
884,849 - dgcP HEPCGN_05050 0.55 -0.6
884,849 - dgcP HEPCGN_05050 0.55 -0.6
884,849 - dgcP HEPCGN_05050 0.55 -0.8
884,942 - dgcP HEPCGN_05050 0.65 -0.8
884,942 - dgcP HEPCGN_05050 0.65 +1.0
884,942 - dgcP HEPCGN_05050 0.65 -0.2
885,147 + dgcP HEPCGN_05050 0.85 -0.2
885,147 + dgcP HEPCGN_05050 0.85 +0.4
885,147 + dgcP HEPCGN_05050 0.85 -0.2
885,147 + dgcP HEPCGN_05050 0.85 +1.1
885,147 + dgcP HEPCGN_05050 0.85 -0.7
885,148 - dgcP HEPCGN_05050 0.85 +0.4
885,148 - dgcP HEPCGN_05050 0.85 -0.6
885,148 - dgcP HEPCGN_05050 0.85 -0.9
885,331 - -2.5
885,363 + -0.8
885,399 - +0.5
885,418 + +0.5
885,472 + +0.2
885,472 + +0.7
885,566 - yoaF HEPCGN_05055 0.31 -0.3
885,605 + yoaF HEPCGN_05055 0.46 +0.3
885,772 + -1.2
885,772 + -1.0
885,772 + -0.2
885,773 - +0.1
885,773 - +0.4
885,829 - yeaO HEPCGN_05060 0.19 -1.3
886,153 - +0.5
886,154 + +0.3
886,539 - nimT HEPCGN_05065 0.32 +1.6
886,577 + nimT HEPCGN_05065 0.35 +1.0
886,666 - nimT HEPCGN_05065 0.42 +0.2
886,738 + nimT HEPCGN_05065 0.48 -0.5
886,742 + nimT HEPCGN_05065 0.49 -0.8
886,742 + nimT HEPCGN_05065 0.49 -2.2
886,743 - nimT HEPCGN_05065 0.49 +0.6
886,743 - nimT HEPCGN_05065 0.49 -0.8
886,926 + nimT HEPCGN_05065 0.64 +0.1
886,986 - nimT HEPCGN_05065 0.69 +2.8
886,993 + nimT HEPCGN_05065 0.70 +2.2
886,993 + nimT HEPCGN_05065 0.70 -0.5
886,997 + nimT HEPCGN_05065 0.70 -0.0
887,036 + nimT HEPCGN_05065 0.74 -2.5
887,039 + nimT HEPCGN_05065 0.74 -0.7
887,040 - nimT HEPCGN_05065 0.74 +0.0
887,043 + nimT HEPCGN_05065 0.74 -1.8
887,107 + nimT HEPCGN_05065 0.80 +0.5

Or see this region's nucleotide sequence