Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04210

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_04205 and HEPCGN_04210 are separated by 191 nucleotidesHEPCGN_04210 and HEPCGN_04215 are separated by 42 nucleotides HEPCGN_04205: HEPCGN_04205 - hok/gef family protein, at 737,386 to 737,526 _04205 HEPCGN_04210: HEPCGN_04210 - Ogr/Delta-like zinc finger, at 737,718 to 737,978 _04210 HEPCGN_04215: HEPCGN_04215 - late control protein, at 738,021 to 739,130 _04215 Position (kb) 737 738Strain fitness (log2 ratio) -2 -1 0 1 2 3at 736.724 kb on + strandat 736.777 kb on + strandat 736.791 kb on - strandat 736.820 kb on + strandat 736.820 kb on + strandat 736.821 kb on - strandat 736.821 kb on - strandat 736.857 kb on - strandat 736.857 kb on - strandat 736.896 kb on + strandat 736.899 kb on + strandat 737.013 kb on + strandat 737.018 kb on - strandat 737.060 kb on + strandat 737.062 kb on + strandat 737.083 kb on + strandat 737.084 kb on - strandat 737.084 kb on - strandat 737.084 kb on - strandat 737.084 kb on - strandat 737.105 kb on + strandat 737.106 kb on - strandat 737.106 kb on - strandat 737.106 kb on - strandat 737.107 kb on + strandat 737.133 kb on + strandat 737.133 kb on + strandat 737.133 kb on + strandat 737.134 kb on - strandat 737.229 kb on - strandat 737.244 kb on + strandat 737.249 kb on + strandat 737.250 kb on - strandat 737.250 kb on - strandat 737.259 kb on + strandat 737.344 kb on - strandat 737.401 kb on + strand, within HEPCGN_04205at 737.402 kb on - strand, within HEPCGN_04205at 737.402 kb on - strand, within HEPCGN_04205at 737.461 kb on + strand, within HEPCGN_04205at 737.461 kb on + strand, within HEPCGN_04205at 737.509 kb on - strand, within HEPCGN_04205at 737.561 kb on - strandat 737.581 kb on - strandat 737.581 kb on - strandat 737.680 kb on - strandat 737.720 kb on - strandat 737.789 kb on + strand, within HEPCGN_04210at 737.882 kb on + strand, within HEPCGN_04210at 737.883 kb on - strand, within HEPCGN_04210at 738.147 kb on - strand, within HEPCGN_04215at 738.235 kb on - strand, within HEPCGN_04215at 738.329 kb on + strand, within HEPCGN_04215at 738.329 kb on + strand, within HEPCGN_04215at 738.330 kb on - strand, within HEPCGN_04215at 738.331 kb on + strand, within HEPCGN_04215at 738.332 kb on - strand, within HEPCGN_04215at 738.415 kb on + strand, within HEPCGN_04215at 738.419 kb on + strand, within HEPCGN_04215at 738.451 kb on + strand, within HEPCGN_04215at 738.862 kb on + strand, within HEPCGN_04215at 738.862 kb on + strand, within HEPCGN_04215at 738.863 kb on - strand, within HEPCGN_04215at 738.863 kb on - strand, within HEPCGN_04215at 738.863 kb on - strand, within HEPCGN_04215

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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736,724 + -0.4
736,777 + -2.1
736,791 - +0.9
736,820 + -0.8
736,820 + +0.0
736,821 - -0.0
736,821 - -0.9
736,857 - -0.5
736,857 - +3.5
736,896 + +0.6
736,899 + +0.6
737,013 + +0.8
737,018 - -0.3
737,060 + -0.0
737,062 + -0.3
737,083 + +1.5
737,084 - +0.4
737,084 - +0.4
737,084 - -2.2
737,084 - +0.7
737,105 + -0.4
737,106 - +0.6
737,106 - -0.5
737,106 - +1.9
737,107 + +0.4
737,133 + -0.7
737,133 + -0.2
737,133 + +0.1
737,134 - +0.2
737,229 - +0.0
737,244 + -0.2
737,249 + +1.3
737,250 - +1.1
737,250 - +0.2
737,259 + +0.8
737,344 - +0.8
737,401 + HEPCGN_04205 0.11 +2.0
737,402 - HEPCGN_04205 0.11 +0.2
737,402 - HEPCGN_04205 0.11 +0.1
737,461 + HEPCGN_04205 0.53 +0.6
737,461 + HEPCGN_04205 0.53 -0.3
737,509 - HEPCGN_04205 0.87 +0.0
737,561 - -0.6
737,581 - -1.5
737,581 - +0.0
737,680 - -0.4
737,720 - +0.5
737,789 + HEPCGN_04210 0.27 -1.2
737,882 + HEPCGN_04210 0.63 +0.6
737,883 - HEPCGN_04210 0.63 -0.6
738,147 - HEPCGN_04215 0.11 +0.8
738,235 - HEPCGN_04215 0.19 +0.7
738,329 + HEPCGN_04215 0.28 -0.1
738,329 + HEPCGN_04215 0.28 +0.1
738,330 - HEPCGN_04215 0.28 -0.8
738,331 + HEPCGN_04215 0.28 +0.1
738,332 - HEPCGN_04215 0.28 -0.6
738,415 + HEPCGN_04215 0.35 +1.2
738,419 + HEPCGN_04215 0.36 -0.4
738,451 + HEPCGN_04215 0.39 +0.7
738,862 + HEPCGN_04215 0.76 -1.4
738,862 + HEPCGN_04215 0.76 -0.2
738,863 - HEPCGN_04215 0.76 +0.9
738,863 - HEPCGN_04215 0.76 +1.3
738,863 - HEPCGN_04215 0.76 -0.7

Or see this region's nucleotide sequence