Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedP and yodD are separated by 296 nucleotides yodD and dsrB are separated by 162 nucleotides dsrB and rcsA are separated by 43 nucleotides rcsA and fliR are separated by 289 nucleotides
HEPCGN_03990: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 703,027 to 703,842
yedP
HEPCGN_04000: yodD - YodD family peroxide/acid resistance protein, at 704,139 to 704,366
yodD
HEPCGN_04005: dsrB - protein DsrB, at 704,529 to 704,717
dsrB
HEPCGN_04010: rcsA - transcriptional regulator RcsA, at 704,761 to 705,384
rcsA
HEPCGN_04015: fliR - flagellar type III secretion system protein FliR, at 705,674 to 706,393
fliR
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.772 kb on + strand at 703.773 kb on - strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.777 kb on - strand at 703.777 kb on - strand at 703.854 kb on - strand at 703.891 kb on + strand at 704.001 kb on - strand at 704.030 kb on + strand at 704.031 kb on - strand at 704.210 kb on + strand, within yodD at 704.210 kb on + strand, within yodD at 704.210 kb on + strand, within yodD at 704.211 kb on - strand, within yodD at 704.211 kb on - strand, within yodD at 704.211 kb on - strand, within yodD at 704.211 kb on - strand, within yodD at 704.434 kb on + strand at 704.434 kb on + strand at 704.435 kb on - strand at 704.436 kb on + strand at 704.499 kb on - strand at 704.610 kb on - strand, within dsrB at 704.625 kb on + strand, within dsrB at 704.625 kb on + strand, within dsrB at 704.715 kb on + strand at 704.796 kb on + strand at 704.820 kb on - strand at 704.863 kb on - strand, within rcsA at 705.149 kb on - strand, within rcsA at 705.226 kb on - strand, within rcsA at 705.228 kb on + strand, within rcsA at 705.319 kb on - strand, within rcsA at 705.330 kb on - strand at 705.353 kb on + strand at 705.501 kb on + strand at 705.701 kb on - strand at 706.040 kb on - strand, within fliR
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 703,772 + -0.6 703,773 - +0.2 703,776 + +0.3 703,776 + -0.7 703,776 + -1.3 703,776 + -1.1 703,776 + -0.5 703,776 + -0.8 703,777 - -0.2 703,777 - +1.1 703,854 - +0.1 703,891 + +0.6 704,001 - +0.2 704,030 + +0.4 704,031 - -1.4 704,210 + yodD HEPCGN_04000 0.31 -0.3 704,210 + yodD HEPCGN_04000 0.31 -0.0 704,210 + yodD HEPCGN_04000 0.31 +0.1 704,211 - yodD HEPCGN_04000 0.32 -0.4 704,211 - yodD HEPCGN_04000 0.32 +0.1 704,211 - yodD HEPCGN_04000 0.32 -1.1 704,211 - yodD HEPCGN_04000 0.32 +2.4 704,434 + +0.4 704,434 + -0.7 704,435 - -2.3 704,436 + +0.3 704,499 - +1.6 704,610 - dsrB HEPCGN_04005 0.43 -1.2 704,625 + dsrB HEPCGN_04005 0.51 +0.1 704,625 + dsrB HEPCGN_04005 0.51 +1.0 704,715 + +1.2 704,796 + +0.1 704,820 - +0.2 704,863 - rcsA HEPCGN_04010 0.16 -0.5 705,149 - rcsA HEPCGN_04010 0.62 -0.1 705,226 - rcsA HEPCGN_04010 0.75 -2.1 705,228 + rcsA HEPCGN_04010 0.75 -0.9 705,319 - rcsA HEPCGN_04010 0.89 -1.0 705,330 - -0.9 705,353 + +0.7 705,501 + +0.3 705,701 - -0.8 706,040 - fliR HEPCGN_04015 0.51 +0.2
Or see this region's nucleotide sequence