Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03435

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbcsA and HEPCGN_03435 are separated by 134 nucleotides HEPCGN_03430: bcsA - Glycosyl transferase family 2, at 588,530 to 589,726 bcsA HEPCGN_03435: HEPCGN_03435 - Uncharacterized deacetylase YaiS, at 589,861 to 590,394 _03435 Position (kb) 589 590 591Strain fitness (log2 ratio) -2 -1 0 1at 589.106 kb on - strand, within bcsAat 589.216 kb on + strand, within bcsAat 589.217 kb on - strand, within bcsAat 589.333 kb on + strand, within bcsAat 589.334 kb on - strand, within bcsAat 589.335 kb on + strand, within bcsAat 589.425 kb on - strand, within bcsAat 589.657 kb on + strandat 589.674 kb on - strandat 590.102 kb on + strand, within HEPCGN_03435at 590.401 kb on + strandat 590.627 kb on - strandat 591.291 kb on + strandat 591.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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589,106 - bcsA HEPCGN_03430 0.48 +0.8
589,216 + bcsA HEPCGN_03430 0.57 -1.2
589,217 - bcsA HEPCGN_03430 0.57 -2.5
589,333 + bcsA HEPCGN_03430 0.67 -0.8
589,334 - bcsA HEPCGN_03430 0.67 -0.1
589,335 + bcsA HEPCGN_03430 0.67 -0.4
589,425 - bcsA HEPCGN_03430 0.75 -1.4
589,657 + +0.2
589,674 - -0.2
590,102 + HEPCGN_03435 0.45 -2.4
590,401 + -0.0
590,627 - +0.3
591,291 + -0.3
591,351 + +0.8

Or see this region's nucleotide sequence