Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02405 and quuD are separated by 17 nucleotides quuD and ompC are separated by 187 nucleotides ompC and HEPCGN_02420 are separated by 510 nucleotides HEPCGN_02420 and Ile2_trna are separated by 40 nucleotides Ile2_trna and Arg_trna are separated by 9 nucleotides
HEPCGN_02405: HEPCGN_02405 - DUF968 domain-containing protein, at 392,036 to 393,025
_02405
HEPCGN_02410: quuD - antitermination protein QuuD, at 393,043 to 393,426
quuD
HEPCGN_02415: ompC - phosphoporin PhoE, at 393,614 to 394,696
ompC
HEPCGN_02420: HEPCGN_02420 - Site-specific DNA-methyltransferase, at 395,207 to 395,485
_02420
HEPCGN_02425: Ile2_trna - tRNA-Ile2(cat), at 395,526 to 395,601
_trna
HEPCGN_02430: Arg_trna - tRNA-Arg(tcg), at 395,611 to 395,687
_trna
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 392.735 kb on - strand, within HEPCGN_02405 at 392.869 kb on + strand, within HEPCGN_02405 at 392.958 kb on - strand at 393.052 kb on - strand at 393.257 kb on + strand, within quuD at 393.266 kb on - strand, within quuD at 393.269 kb on + strand, within quuD at 393.269 kb on + strand, within quuD at 393.269 kb on + strand, within quuD at 393.270 kb on - strand, within quuD at 393.301 kb on - strand, within quuD at 393.322 kb on + strand, within quuD at 393.381 kb on - strand, within quuD at 393.491 kb on + strand at 393.491 kb on + strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.493 kb on + strand at 393.495 kb on + strand at 393.507 kb on + strand at 393.508 kb on - strand at 393.511 kb on + strand at 393.511 kb on + strand at 393.512 kb on - strand at 393.514 kb on + strand at 393.563 kb on - strand at 393.563 kb on - strand at 393.564 kb on + strand at 393.594 kb on + strand at 393.635 kb on + strand at 393.742 kb on - strand, within ompC at 393.773 kb on + strand, within ompC at 393.774 kb on - strand, within ompC at 393.805 kb on + strand, within ompC at 393.823 kb on - strand, within ompC at 393.823 kb on - strand, within ompC at 393.823 kb on - strand, within ompC at 393.858 kb on + strand, within ompC at 393.859 kb on - strand, within ompC at 393.904 kb on + strand, within ompC at 393.939 kb on + strand, within ompC at 393.973 kb on - strand, within ompC at 394.067 kb on - strand, within ompC at 394.071 kb on + strand, within ompC at 394.071 kb on + strand, within ompC at 394.072 kb on - strand, within ompC at 394.072 kb on - strand, within ompC at 394.072 kb on - strand, within ompC at 394.072 kb on - strand, within ompC at 394.099 kb on - strand, within ompC at 394.104 kb on + strand, within ompC at 394.105 kb on - strand, within ompC at 394.105 kb on - strand, within ompC at 394.105 kb on - strand, within ompC at 394.109 kb on - strand, within ompC at 394.145 kb on + strand, within ompC at 394.222 kb on + strand, within ompC at 394.223 kb on - strand, within ompC at 394.228 kb on - strand, within ompC at 394.329 kb on + strand, within ompC at 394.335 kb on - strand, within ompC at 394.524 kb on + strand, within ompC at 394.525 kb on - strand, within ompC at 394.525 kb on - strand, within ompC at 394.529 kb on - strand, within ompC at 394.529 kb on - strand, within ompC at 394.553 kb on - strand, within ompC at 394.564 kb on - strand, within ompC at 394.564 kb on - strand, within ompC at 394.590 kb on - strand at 394.664 kb on + strand at 394.665 kb on - strand at 394.665 kb on - strand at 394.699 kb on + strand at 394.913 kb on + strand at 395.060 kb on - strand at 395.123 kb on - strand at 395.407 kb on + strand, within HEPCGN_02420 at 395.407 kb on + strand, within HEPCGN_02420 at 395.467 kb on - strand at 395.487 kb on - strand at 395.602 kb on + strand at 395.602 kb on + strand at 395.602 kb on + strand at 395.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 392,735 - HEPCGN_02405 0.71 +1.2 392,869 + HEPCGN_02405 0.84 +0.8 392,958 - +1.4 393,052 - -0.1 393,257 + quuD HEPCGN_02410 0.56 -0.9 393,266 - quuD HEPCGN_02410 0.58 -0.2 393,269 + quuD HEPCGN_02410 0.59 +0.1 393,269 + quuD HEPCGN_02410 0.59 -0.0 393,269 + quuD HEPCGN_02410 0.59 -1.3 393,270 - quuD HEPCGN_02410 0.59 +0.7 393,301 - quuD HEPCGN_02410 0.67 +1.7 393,322 + quuD HEPCGN_02410 0.73 -0.4 393,381 - quuD HEPCGN_02410 0.88 +0.4 393,491 + -0.0 393,491 + -0.1 393,492 - -0.7 393,492 - -0.8 393,493 + +1.0 393,495 + +0.6 393,507 + +0.4 393,508 - -0.8 393,511 + +0.3 393,511 + -0.8 393,512 - -0.7 393,514 + -0.7 393,563 - +0.8 393,563 - +0.5 393,564 + +0.4 393,594 + +1.4 393,635 + -0.9 393,742 - ompC HEPCGN_02415 0.12 -1.8 393,773 + ompC HEPCGN_02415 0.15 -0.2 393,774 - ompC HEPCGN_02415 0.15 +0.5 393,805 + ompC HEPCGN_02415 0.18 +1.4 393,823 - ompC HEPCGN_02415 0.19 +1.7 393,823 - ompC HEPCGN_02415 0.19 -0.3 393,823 - ompC HEPCGN_02415 0.19 +3.3 393,858 + ompC HEPCGN_02415 0.23 -0.6 393,859 - ompC HEPCGN_02415 0.23 +0.0 393,904 + ompC HEPCGN_02415 0.27 +0.6 393,939 + ompC HEPCGN_02415 0.30 -0.6 393,973 - ompC HEPCGN_02415 0.33 -1.2 394,067 - ompC HEPCGN_02415 0.42 -0.7 394,071 + ompC HEPCGN_02415 0.42 +2.4 394,071 + ompC HEPCGN_02415 0.42 -0.1 394,072 - ompC HEPCGN_02415 0.42 +0.4 394,072 - ompC HEPCGN_02415 0.42 -0.0 394,072 - ompC HEPCGN_02415 0.42 +0.4 394,072 - ompC HEPCGN_02415 0.42 +0.0 394,099 - ompC HEPCGN_02415 0.45 +0.1 394,104 + ompC HEPCGN_02415 0.45 -0.4 394,105 - ompC HEPCGN_02415 0.45 +0.6 394,105 - ompC HEPCGN_02415 0.45 -1.3 394,105 - ompC HEPCGN_02415 0.45 -0.4 394,109 - ompC HEPCGN_02415 0.46 -0.2 394,145 + ompC HEPCGN_02415 0.49 +0.8 394,222 + ompC HEPCGN_02415 0.56 -0.3 394,223 - ompC HEPCGN_02415 0.56 +0.1 394,228 - ompC HEPCGN_02415 0.57 -0.0 394,329 + ompC HEPCGN_02415 0.66 -0.8 394,335 - ompC HEPCGN_02415 0.67 +0.4 394,524 + ompC HEPCGN_02415 0.84 -0.5 394,525 - ompC HEPCGN_02415 0.84 +1.0 394,525 - ompC HEPCGN_02415 0.84 +1.5 394,529 - ompC HEPCGN_02415 0.84 -2.0 394,529 - ompC HEPCGN_02415 0.84 +0.3 394,553 - ompC HEPCGN_02415 0.87 +0.9 394,564 - ompC HEPCGN_02415 0.88 +0.4 394,564 - ompC HEPCGN_02415 0.88 +0.9 394,590 - -0.8 394,664 + -2.1 394,665 - +0.1 394,665 - -0.6 394,699 + -1.4 394,913 + -0.3 395,060 - +1.2 395,123 - +2.1 395,407 + HEPCGN_02420 0.72 -1.2 395,407 + HEPCGN_02420 0.72 -0.2 395,467 - +0.5 395,487 - +1.0 395,602 + +0.2 395,602 + +1.1 395,602 + -1.9 395,689 + -0.3
Or see this region's nucleotide sequence