Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02400

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaB and HEPCGN_02400 overlap by 4 nucleotidesHEPCGN_02400 and HEPCGN_02405 are separated by 52 nucleotides HEPCGN_02395: dnaB - helicase, at 390,329 to 391,729 dnaB HEPCGN_02400: HEPCGN_02400 - hypothetical protein, at 391,726 to 391,983 _02400 HEPCGN_02405: HEPCGN_02405 - DUF968 domain-containing protein, at 392,036 to 393,025 _02405 Position (kb) 391 392Strain fitness (log2 ratio) -2 -1 0 1at 390.928 kb on - strand, within dnaBat 391.057 kb on + strand, within dnaBat 391.057 kb on + strand, within dnaBat 391.057 kb on + strand, within dnaBat 391.058 kb on - strand, within dnaBat 391.058 kb on - strand, within dnaBat 391.171 kb on + strand, within dnaBat 391.345 kb on + strand, within dnaBat 391.512 kb on - strand, within dnaBat 391.830 kb on + strand, within HEPCGN_02400at 391.849 kb on - strand, within HEPCGN_02400at 391.974 kb on + strandat 392.735 kb on - strand, within HEPCGN_02405at 392.869 kb on + strand, within HEPCGN_02405at 392.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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390,928 - dnaB HEPCGN_02395 0.43 +0.2
391,057 + dnaB HEPCGN_02395 0.52 -1.0
391,057 + dnaB HEPCGN_02395 0.52 +0.3
391,057 + dnaB HEPCGN_02395 0.52 -1.5
391,058 - dnaB HEPCGN_02395 0.52 -0.5
391,058 - dnaB HEPCGN_02395 0.52 +0.1
391,171 + dnaB HEPCGN_02395 0.60 -0.3
391,345 + dnaB HEPCGN_02395 0.73 -0.4
391,512 - dnaB HEPCGN_02395 0.84 -1.8
391,830 + HEPCGN_02400 0.40 -1.9
391,849 - HEPCGN_02400 0.48 -0.4
391,974 + +0.3
392,735 - HEPCGN_02405 0.71 +1.2
392,869 + HEPCGN_02405 0.84 +0.8
392,958 - +1.4

Or see this region's nucleotide sequence