Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02090

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotH and potI overlap by 4 nucleotidespotI and ybjO are separated by 59 nucleotidesybjO and rlmC are separated by 40 nucleotides HEPCGN_02080: potH - putrescine ABC transporter permease PotH, at 340,721 to 341,674 potH HEPCGN_02085: potI - putrescine ABC transporter permease PotI, at 341,671 to 342,516 potI HEPCGN_02090: ybjO - Inner membrane protein YbjO, at 342,576 to 343,064 ybjO HEPCGN_02095: rlmC - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 343,105 to 344,232 rlmC Position (kb) 342 343 344Strain fitness (log2 ratio) -1 0 1 2 3at 341.613 kb on + strandat 341.614 kb on - strandat 341.982 kb on + strand, within potIat 342.145 kb on - strand, within potIat 342.348 kb on - strand, within potIat 342.413 kb on + strand, within potIat 342.413 kb on + strand, within potIat 342.542 kb on + strandat 342.546 kb on + strandat 342.546 kb on + strandat 342.547 kb on - strandat 342.674 kb on + strand, within ybjOat 342.754 kb on + strand, within ybjOat 342.864 kb on + strand, within ybjOat 342.864 kb on + strand, within ybjOat 342.864 kb on + strand, within ybjOat 342.894 kb on + strand, within ybjOat 343.001 kb on + strand, within ybjOat 343.062 kb on + strandat 343.069 kb on + strandat 343.070 kb on - strandat 343.104 kb on + strandat 343.105 kb on - strandat 343.185 kb on + strandat 343.186 kb on - strandat 343.341 kb on + strand, within rlmCat 343.341 kb on + strand, within rlmCat 343.342 kb on - strand, within rlmCat 343.342 kb on - strand, within rlmCat 343.342 kb on - strand, within rlmCat 343.417 kb on - strand, within rlmCat 343.441 kb on + strand, within rlmCat 343.474 kb on + strand, within rlmCat 343.474 kb on + strand, within rlmCat 343.475 kb on - strand, within rlmCat 343.475 kb on - strand, within rlmCat 343.526 kb on + strand, within rlmCat 343.590 kb on - strand, within rlmCat 343.590 kb on - strand, within rlmCat 343.605 kb on + strand, within rlmCat 343.632 kb on + strand, within rlmCat 343.633 kb on - strand, within rlmCat 343.663 kb on + strand, within rlmCat 343.663 kb on + strand, within rlmCat 343.707 kb on - strand, within rlmCat 343.812 kb on + strand, within rlmCat 343.812 kb on + strand, within rlmCat 343.812 kb on + strand, within rlmCat 343.812 kb on + strand, within rlmCat 343.813 kb on - strand, within rlmCat 343.813 kb on - strand, within rlmCat 343.813 kb on - strand, within rlmCat 344.062 kb on + strand, within rlmC

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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341,613 + +0.5
341,614 - +0.8
341,982 + potI HEPCGN_02085 0.37 -0.1
342,145 - potI HEPCGN_02085 0.56 +0.1
342,348 - potI HEPCGN_02085 0.80 +1.1
342,413 + potI HEPCGN_02085 0.88 -0.0
342,413 + potI HEPCGN_02085 0.88 -0.5
342,542 + +0.7
342,546 + -1.6
342,546 + -0.5
342,547 - -0.1
342,674 + ybjO HEPCGN_02090 0.20 +0.0
342,754 + ybjO HEPCGN_02090 0.36 -1.4
342,864 + ybjO HEPCGN_02090 0.59 -1.6
342,864 + ybjO HEPCGN_02090 0.59 +1.5
342,864 + ybjO HEPCGN_02090 0.59 +0.5
342,894 + ybjO HEPCGN_02090 0.65 +0.1
343,001 + ybjO HEPCGN_02090 0.87 -0.5
343,062 + +0.8
343,069 + +2.7
343,070 - -1.0
343,104 + -0.1
343,105 - +0.0
343,185 + -0.5
343,186 - -0.0
343,341 + rlmC HEPCGN_02095 0.21 +1.3
343,341 + rlmC HEPCGN_02095 0.21 +1.0
343,342 - rlmC HEPCGN_02095 0.21 +0.0
343,342 - rlmC HEPCGN_02095 0.21 +0.3
343,342 - rlmC HEPCGN_02095 0.21 +0.4
343,417 - rlmC HEPCGN_02095 0.28 -0.3
343,441 + rlmC HEPCGN_02095 0.30 +1.1
343,474 + rlmC HEPCGN_02095 0.33 -1.5
343,474 + rlmC HEPCGN_02095 0.33 +0.3
343,475 - rlmC HEPCGN_02095 0.33 -0.6
343,475 - rlmC HEPCGN_02095 0.33 -0.2
343,526 + rlmC HEPCGN_02095 0.37 -0.8
343,590 - rlmC HEPCGN_02095 0.43 +0.1
343,590 - rlmC HEPCGN_02095 0.43 +0.0
343,605 + rlmC HEPCGN_02095 0.44 -1.7
343,632 + rlmC HEPCGN_02095 0.47 +0.4
343,633 - rlmC HEPCGN_02095 0.47 +2.2
343,663 + rlmC HEPCGN_02095 0.49 +0.1
343,663 + rlmC HEPCGN_02095 0.49 -1.6
343,707 - rlmC HEPCGN_02095 0.53 +0.3
343,812 + rlmC HEPCGN_02095 0.63 -0.1
343,812 + rlmC HEPCGN_02095 0.63 -1.1
343,812 + rlmC HEPCGN_02095 0.63 +2.4
343,812 + rlmC HEPCGN_02095 0.63 +3.6
343,813 - rlmC HEPCGN_02095 0.63 +0.1
343,813 - rlmC HEPCGN_02095 0.63 -0.7
343,813 - rlmC HEPCGN_02095 0.63 -1.4
344,062 + rlmC HEPCGN_02095 0.85 +0.5

Or see this region's nucleotide sequence