Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ibeB and cusF are separated by 23 nucleotides cusF and cusB are separated by 15 nucleotides cusB and cusA are separated by 11 nucleotides
HEPCGN_00590: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 42,387 to 43,769
ibeB
HEPCGN_00595: cusF - Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF, at 43,793 to 44,125
cusF
HEPCGN_00600: cusB - Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB, at 44,141 to 45,364
cusB
HEPCGN_00605: cusA - Cu(+)/Ag(+) efflux RND transporter permease subunit CusA, at 45,376 to 48,519
cusA
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.620 kb on + strand, within ibeB at 43.673 kb on - strand at 43.708 kb on - strand at 43.823 kb on - strand at 43.847 kb on - strand, within cusF at 44.289 kb on - strand, within cusB at 44.329 kb on + strand, within cusB at 44.354 kb on + strand, within cusB at 44.386 kb on - strand, within cusB at 44.487 kb on - strand, within cusB at 44.496 kb on - strand, within cusB at 44.572 kb on - strand, within cusB at 44.634 kb on - strand, within cusB at 44.764 kb on + strand, within cusB at 44.765 kb on - strand, within cusB at 44.836 kb on + strand, within cusB at 44.932 kb on + strand, within cusB at 44.933 kb on - strand, within cusB at 45.148 kb on + strand, within cusB at 45.510 kb on - strand at 45.575 kb on - strand at 45.650 kb on - strand at 45.650 kb on - strand at 45.650 kb on - strand at 45.655 kb on + strand at 45.655 kb on + strand at 45.656 kb on - strand at 45.656 kb on - strand at 45.799 kb on + strand, within cusA at 45.823 kb on - strand, within cusA at 45.842 kb on + strand, within cusA at 45.872 kb on - strand, within cusA at 45.878 kb on + strand, within cusA at 45.934 kb on + strand, within cusA at 45.970 kb on + strand, within cusA at 45.993 kb on - strand, within cusA at 46.061 kb on - strand, within cusA at 46.062 kb on + strand, within cusA at 46.063 kb on - strand, within cusA at 46.063 kb on - strand, within cusA at 46.063 kb on - strand, within cusA at 46.104 kb on + strand, within cusA at 46.118 kb on + strand, within cusA at 46.341 kb on + strand, within cusA at 46.341 kb on + strand, within cusA at 46.342 kb on - strand, within cusA
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 43,620 + ibeB HEPCGN_00590 0.89 +0.5 43,673 - -2.8 43,708 - -0.5 43,823 - +1.3 43,847 - cusF HEPCGN_00595 0.16 -0.2 44,289 - cusB HEPCGN_00600 0.12 +0.9 44,329 + cusB HEPCGN_00600 0.15 -1.1 44,354 + cusB HEPCGN_00600 0.17 +0.1 44,386 - cusB HEPCGN_00600 0.20 +1.0 44,487 - cusB HEPCGN_00600 0.28 -0.7 44,496 - cusB HEPCGN_00600 0.29 +0.1 44,572 - cusB HEPCGN_00600 0.35 +1.1 44,634 - cusB HEPCGN_00600 0.40 +0.7 44,764 + cusB HEPCGN_00600 0.51 -0.7 44,765 - cusB HEPCGN_00600 0.51 +0.1 44,836 + cusB HEPCGN_00600 0.57 -0.6 44,932 + cusB HEPCGN_00600 0.65 -1.5 44,933 - cusB HEPCGN_00600 0.65 -2.9 45,148 + cusB HEPCGN_00600 0.82 +3.7 45,510 - +0.0 45,575 - +0.2 45,650 - -1.2 45,650 - +0.4 45,650 - +1.1 45,655 + -1.2 45,655 + -0.1 45,656 - -1.0 45,656 - +0.1 45,799 + cusA HEPCGN_00605 0.13 -0.3 45,823 - cusA HEPCGN_00605 0.14 +1.0 45,842 + cusA HEPCGN_00605 0.15 -0.1 45,872 - cusA HEPCGN_00605 0.16 +0.2 45,878 + cusA HEPCGN_00605 0.16 -0.1 45,934 + cusA HEPCGN_00605 0.18 +0.2 45,970 + cusA HEPCGN_00605 0.19 -1.8 45,993 - cusA HEPCGN_00605 0.20 -0.5 46,061 - cusA HEPCGN_00605 0.22 -0.5 46,062 + cusA HEPCGN_00605 0.22 -0.5 46,063 - cusA HEPCGN_00605 0.22 -1.3 46,063 - cusA HEPCGN_00605 0.22 -2.0 46,063 - cusA HEPCGN_00605 0.22 +0.3 46,104 + cusA HEPCGN_00605 0.23 +1.9 46,118 + cusA HEPCGN_00605 0.24 +0.1 46,341 + cusA HEPCGN_00605 0.31 -0.6 46,341 + cusA HEPCGN_00605 0.31 -0.2 46,342 - cusA HEPCGN_00605 0.31 -0.9
Or see this region's nucleotide sequence