Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00405

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00400 and HEPCGN_00405 are separated by 287 nucleotidesHEPCGN_00405 and ssb overlap by 4 nucleotidesssb and HEPCGN_00415 are separated by 217 nucleotides HEPCGN_00400: HEPCGN_00400 - DNA primase, at 4,802 to 6,439 _00400 HEPCGN_00405: HEPCGN_00405 - hypothetical protein, at 6,727 to 6,972 _00405 HEPCGN_00410: ssb - single-stranded DNA-binding protein, at 6,969 to 7,418 ssb HEPCGN_00415: HEPCGN_00415 - capsid protein, at 7,636 to 8,676 _00415 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.747 kb on - strand, within HEPCGN_00400at 5.780 kb on - strand, within HEPCGN_00400at 5.857 kb on - strand, within HEPCGN_00400at 5.928 kb on + strand, within HEPCGN_00400at 5.989 kb on - strand, within HEPCGN_00400at 6.025 kb on + strand, within HEPCGN_00400at 6.063 kb on + strand, within HEPCGN_00400at 6.064 kb on - strand, within HEPCGN_00400at 6.066 kb on - strand, within HEPCGN_00400at 6.154 kb on - strand, within HEPCGN_00400at 6.218 kb on + strand, within HEPCGN_00400at 6.227 kb on + strand, within HEPCGN_00400at 6.236 kb on + strand, within HEPCGN_00400at 6.236 kb on + strand, within HEPCGN_00400at 6.238 kb on + strand, within HEPCGN_00400at 6.238 kb on + strand, within HEPCGN_00400at 6.239 kb on - strand, within HEPCGN_00400at 6.260 kb on - strand, within HEPCGN_00400at 6.328 kb on + strandat 6.328 kb on + strandat 6.540 kb on + strandat 6.720 kb on - strandat 6.726 kb on + strandat 6.727 kb on - strandat 6.858 kb on + strand, within HEPCGN_00405at 6.859 kb on - strand, within HEPCGN_00405at 6.982 kb on + strandat 7.193 kb on + strand, within ssbat 7.194 kb on - strand, within ssbat 7.194 kb on - strand, within ssbat 7.264 kb on + strand, within ssbat 7.543 kb on - strandat 7.595 kb on + strandat 7.971 kb on + strand, within HEPCGN_00415

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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5,747 - HEPCGN_00400 0.58 +1.2
5,780 - HEPCGN_00400 0.60 +0.8
5,857 - HEPCGN_00400 0.64 -0.3
5,928 + HEPCGN_00400 0.69 +0.2
5,989 - HEPCGN_00400 0.72 +0.6
6,025 + HEPCGN_00400 0.75 -1.1
6,063 + HEPCGN_00400 0.77 +0.3
6,064 - HEPCGN_00400 0.77 -0.3
6,066 - HEPCGN_00400 0.77 +0.4
6,154 - HEPCGN_00400 0.83 +0.3
6,218 + HEPCGN_00400 0.86 +0.3
6,227 + HEPCGN_00400 0.87 -0.1
6,236 + HEPCGN_00400 0.88 -0.2
6,236 + HEPCGN_00400 0.88 -2.0
6,238 + HEPCGN_00400 0.88 -0.8
6,238 + HEPCGN_00400 0.88 -2.8
6,239 - HEPCGN_00400 0.88 -0.1
6,260 - HEPCGN_00400 0.89 -0.6
6,328 + +0.6
6,328 + -0.3
6,540 + +0.3
6,720 - +0.2
6,726 + -1.7
6,727 - -0.7
6,858 + HEPCGN_00405 0.53 +0.5
6,859 - HEPCGN_00405 0.54 -0.9
6,982 + +1.3
7,193 + ssb HEPCGN_00410 0.50 +0.6
7,194 - ssb HEPCGN_00410 0.50 +0.3
7,194 - ssb HEPCGN_00410 0.50 +0.4
7,264 + ssb HEPCGN_00410 0.66 -0.5
7,543 - +0.1
7,595 + +0.1
7,971 + HEPCGN_00415 0.32 +0.6

Or see this region's nucleotide sequence