Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26815

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS629 and xerD are separated by 117 nucleotidesxerD and HEPCGN_26820 are separated by 193 nucleotidesHEPCGN_26820 and yneK are separated by 83 nucleotides HEPCGN_26810: tnp-IS629 - IS3 family IS629 transposase, at 4,110,186 to 4,111,073 tnp-IS629 HEPCGN_26815: xerD - integrase, at 4,111,191 to 4,111,445 xerD HEPCGN_26820: HEPCGN_26820 - LysR-substrate domain-containing protein, at 4,111,639 to 4,111,854 _26820 HEPCGN_26825: yneK - putative protein YneK, at 4,111,938 to 4,113,053 yneK Position (kb) 4111 4112Strain fitness (log2 ratio) -1 0 1 2 3 4at 4111.321 kb on + strand, within xerDat 4111.322 kb on - strand, within xerDat 4111.689 kb on + strand, within HEPCGN_26820at 4111.702 kb on - strand, within HEPCGN_26820at 4111.813 kb on - strand, within HEPCGN_26820at 4111.813 kb on - strand, within HEPCGN_26820at 4111.888 kb on + strandat 4111.907 kb on + strandat 4111.919 kb on - strandat 4112.179 kb on - strand, within yneK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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4,111,321 + xerD HEPCGN_26815 0.51 -1.1
4,111,322 - xerD HEPCGN_26815 0.51 -1.3
4,111,689 + HEPCGN_26820 0.23 -0.8
4,111,702 - HEPCGN_26820 0.29 -0.8
4,111,813 - HEPCGN_26820 0.81 +0.6
4,111,813 - HEPCGN_26820 0.81 -0.4
4,111,888 + +0.2
4,111,907 + +0.0
4,111,919 - +1.3
4,112,179 - yneK HEPCGN_26825 0.22 +4.6

Or see this region's nucleotide sequence