Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16045

Experiment: Bas18

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas18
1,981,375	+				-1.0
1,981,376	-				+1.4
1,981,376	-				-0.5
1,981,376	-				+0.6
1,981,381	+				-0.4
1,981,381	+				-1.0
1,981,391	-				+2.9
1,981,395	-				+0.2
1,981,400	+				-0.0
1,981,405	-				-0.1
1,981,431	+				+0.3
1,981,432	-				+0.1
1,981,436	-				-0.7
1,981,436	-				+1.1
1,981,576	+	ppiA	HEPCGN_16035	0.16	+1.2
1,981,577	-	ppiA	HEPCGN_16035	0.16	+0.5
1,981,577	-	ppiA	HEPCGN_16035	0.16	-1.0
1,981,677	+	ppiA	HEPCGN_16035	0.34	+0.4
1,981,678	-	ppiA	HEPCGN_16035	0.34	-0.1
1,981,679	+	ppiA	HEPCGN_16035	0.34	+0.4
1,981,679	+	ppiA	HEPCGN_16035	0.34	-0.1
1,981,791	-	ppiA	HEPCGN_16035	0.53	-0.4
1,981,927	+	ppiA	HEPCGN_16035	0.77	+0.3
1,982,030	+				+0.6
1,982,030	+				-0.5
1,982,030	+				-0.3
1,982,031	-				-1.1
1,982,055	+				-0.2
1,982,125	+				+0.1
1,982,125	+				+0.5
1,982,126	-				-0.5
1,982,212	+		HEPCGN_16040	0.30	+1.9
1,982,219	-		HEPCGN_16040	0.34	-0.0
1,982,262	+		HEPCGN_16040	0.60	-0.0
1,982,318	+				+0.0
1,982,319	-				-0.1
1,982,358	+				+0.6
1,982,373	-				+2.8
1,982,518	-	fic	HEPCGN_16045	0.33	-0.7
1,982,561	+	fic	HEPCGN_16045	0.40	-1.4
1,982,561	+	fic	HEPCGN_16045	0.40	-1.8
1,982,598	+	fic	HEPCGN_16045	0.46	-1.6
1,982,599	-	fic	HEPCGN_16045	0.46	+0.4
1,982,650	-	fic	HEPCGN_16045	0.55	-1.8
1,982,697	+	fic	HEPCGN_16045	0.63	-0.2
1,982,700	+	fic	HEPCGN_16045	0.63	-0.7
1,982,881	+				-0.6
1,982,881	+				+0.2
1,982,881	+				+0.4
1,982,886	-				-1.5
1,982,886	-				+0.8
1,982,896	+				+0.5
1,982,974	+				+1.6
1,982,975	-				+0.3
1,982,975	-				+0.3
1,983,158	-	pabA	HEPCGN_16050	0.36	+0.3
1,983,279	+	pabA	HEPCGN_16050	0.58	-0.1
1,983,293	+	pabA	HEPCGN_16050	0.60	+1.0
1,983,294	-	pabA	HEPCGN_16050	0.60	+1.6
1,983,465	+				-0.1
1,983,531	+				-0.1
1,983,584	-				+0.5
1,983,584	-				+1.5
1,983,584	-				-0.3
1,983,662	-				-0.6
1,983,687	-				-0.2
1,983,730	+	argD,dapC	HEPCGN_16055	0.11	-1.0
1,983,730	+	argD,dapC	HEPCGN_16055	0.11	-1.4
1,983,731	-	argD,dapC	HEPCGN_16055	0.11	-0.4
1,983,828	+	argD,dapC	HEPCGN_16055	0.19	-0.4