Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12375

Experiment: Bas18

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas18
1,225,795	+	cytR	HEPCGN_12370	0.47	-1.1
1,225,795	+	cytR	HEPCGN_12370	0.47	+0.5
1,225,795	+	cytR	HEPCGN_12370	0.47	+0.3
1,225,795	+	cytR	HEPCGN_12370	0.47	+0.0
1,225,796	-	cytR	HEPCGN_12370	0.47	+0.6
1,225,796	-	cytR	HEPCGN_12370	0.47	+0.7
1,225,799	+	cytR	HEPCGN_12370	0.47	-0.0
1,225,800	-	cytR	HEPCGN_12370	0.47	+0.3
1,225,800	-	cytR	HEPCGN_12370	0.47	+0.0
1,225,808	+	cytR	HEPCGN_12370	0.48	+1.6
1,225,808	+	cytR	HEPCGN_12370	0.48	+2.1
1,225,809	-	cytR	HEPCGN_12370	0.48	-0.3
1,225,809	-	cytR	HEPCGN_12370	0.48	+0.3
1,225,851	+	cytR	HEPCGN_12370	0.52	+0.4
1,225,881	-	cytR	HEPCGN_12370	0.55	+0.8
1,225,881	-	cytR	HEPCGN_12370	0.55	+1.2
1,225,882	+	cytR	HEPCGN_12370	0.55	+0.8
1,225,929	+	cytR	HEPCGN_12370	0.60	-0.8
1,225,974	+	cytR	HEPCGN_12370	0.64	+0.9
1,225,974	+	cytR	HEPCGN_12370	0.64	-0.0
1,226,051	+	cytR	HEPCGN_12370	0.72	+0.6
1,226,234	+	cytR	HEPCGN_12370	0.90	+0.5
1,226,234	+	cytR	HEPCGN_12370	0.90	-0.6
1,226,235	-	cytR	HEPCGN_12370	0.90	+0.5
1,226,242	+				+0.1
1,226,242	+				+0.1
1,226,243	-				+0.8
1,226,342	+				-1.5
1,226,351	-				-0.1
1,226,351	-				-1.3
1,226,388	+				+0.1
1,226,412	+				+0.1
1,226,916	-	ftsN	HEPCGN_12375	0.44	-0.6
1,226,982	+	ftsN	HEPCGN_12375	0.52	-0.4
1,226,983	-	ftsN	HEPCGN_12375	0.52	-1.4
1,227,222	-	ftsN	HEPCGN_12375	0.80	-0.8
1,227,357	+				+0.4
1,227,357	+				-0.5
1,227,357	+				+3.0
1,227,358	-				-0.4
1,227,358	-				-1.4
1,227,413	+				+0.4
1,227,416	-				-1.0
1,227,416	-				-2.6
1,227,416	-				-0.2
1,227,452	-				-1.0
1,227,459	-				-0.7
1,227,490	+				-0.7
1,227,490	+				+0.2
1,227,490	+				-0.2
1,227,490	+				-2.9
1,227,490	+				+0.8
1,227,491	-				-0.0
1,227,491	-				+0.5
1,227,492	+				+1.5
1,227,492	+				-2.3
1,227,492	+				-1.6
1,227,493	-				-2.3
1,227,493	-				-1.8
1,227,493	-				-0.3
1,227,493	-				-0.3
1,227,496	-				-0.1
1,227,501	+				-0.9
1,227,562	-	hslV	HEPCGN_12380	0.15	+0.6
1,227,647	-	hslV	HEPCGN_12380	0.31	-1.0
1,227,647	-	hslV	HEPCGN_12380	0.31	+0.3
1,227,796	+	hslV	HEPCGN_12380	0.59	+0.2
1,227,797	-	hslV	HEPCGN_12380	0.59	+1.0
1,227,841	+	hslV	HEPCGN_12380	0.68	-2.7
1,227,841	+	hslV	HEPCGN_12380	0.68	+0.9
1,227,841	+	hslV	HEPCGN_12380	0.68	+1.0
1,227,842	-	hslV	HEPCGN_12380	0.68	+1.2
1,227,842	-	hslV	HEPCGN_12380	0.68	-1.7
1,227,909	+	hslV	HEPCGN_12380	0.80	+0.0
1,227,965	+				+1.3
1,227,965	+				-0.5
1,227,965	+				-0.1
1,227,966	-				-3.0
1,227,966	-				-0.3
1,227,967	+				+1.2
1,227,968	-				+1.6
1,227,996	+				-1.5
1,228,315	+	hslU	HEPCGN_12385	0.22	-1.0