Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra5 and HEPCGN_10980 overlap by 17 nucleotides HEPCGN_10980 and HEPCGN_10985 are separated by 238 nucleotides HEPCGN_10985 and HEPCGN_10990 are separated by 271 nucleotides
HEPCGN_10975: tra5 - IS3 family transposase, at 937,130 to 937,576
tra5
HEPCGN_10980: HEPCGN_10980 - Transposase, at 937,560 to 937,778
_10980
HEPCGN_10985: HEPCGN_10985 - Insertion element IS629 uncharacterized protein, at 938,017 to 938,343
_10985
HEPCGN_10990: HEPCGN_10990 - IS256 family transposase, at 938,615 to 939,385
_10990
Position (kb) 938
939 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 937.019 kb on - strand at 937.019 kb on - strand at 937.423 kb on - strand, within tra5 at 937.543 kb on + strand at 937.556 kb on + strand at 937.580 kb on - strand at 937.580 kb on - strand at 937.826 kb on - strand at 937.846 kb on - strand at 937.848 kb on - strand at 937.848 kb on - strand at 937.856 kb on + strand at 937.857 kb on - strand at 937.857 kb on - strand at 938.184 kb on - strand, within HEPCGN_10985 at 938.443 kb on - strand at 938.546 kb on - strand at 938.784 kb on + strand, within HEPCGN_10990 at 938.820 kb on - strand, within HEPCGN_10990 at 938.892 kb on - strand, within HEPCGN_10990 at 938.898 kb on + strand, within HEPCGN_10990 at 938.943 kb on - strand, within HEPCGN_10990 at 938.965 kb on + strand, within HEPCGN_10990 at 938.985 kb on + strand, within HEPCGN_10990 at 939.114 kb on + strand, within HEPCGN_10990 at 939.115 kb on - strand, within HEPCGN_10990 at 939.115 kb on - strand, within HEPCGN_10990 at 939.131 kb on + strand, within HEPCGN_10990 at 939.131 kb on + strand, within HEPCGN_10990 at 939.132 kb on - strand, within HEPCGN_10990 at 939.132 kb on - strand, within HEPCGN_10990 at 939.152 kb on - strand, within HEPCGN_10990 at 939.152 kb on - strand, within HEPCGN_10990 at 939.183 kb on - strand, within HEPCGN_10990 at 939.240 kb on - strand, within HEPCGN_10990 at 939.290 kb on + strand, within HEPCGN_10990 at 939.327 kb on - strand at 939.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 937,019 - +0.2 937,019 - +0.2 937,423 - tra5 HEPCGN_10975 0.66 +1.1 937,543 + +0.1 937,556 + +0.8 937,580 - -0.1 937,580 - -0.2 937,826 - +0.4 937,846 - -0.2 937,848 - +0.1 937,848 - +4.0 937,856 + -1.2 937,857 - -0.4 937,857 - -1.0 938,184 - HEPCGN_10985 0.51 -0.7 938,443 - +2.2 938,546 - -0.8 938,784 + HEPCGN_10990 0.22 -0.4 938,820 - HEPCGN_10990 0.27 -2.1 938,892 - HEPCGN_10990 0.36 -0.5 938,898 + HEPCGN_10990 0.37 -0.0 938,943 - HEPCGN_10990 0.43 +0.6 938,965 + HEPCGN_10990 0.45 +0.4 938,985 + HEPCGN_10990 0.48 +0.6 939,114 + HEPCGN_10990 0.65 -0.5 939,115 - HEPCGN_10990 0.65 +0.4 939,115 - HEPCGN_10990 0.65 +1.7 939,131 + HEPCGN_10990 0.67 -1.4 939,131 + HEPCGN_10990 0.67 +0.8 939,132 - HEPCGN_10990 0.67 -1.0 939,132 - HEPCGN_10990 0.67 -0.4 939,152 - HEPCGN_10990 0.70 +0.6 939,152 - HEPCGN_10990 0.70 -2.3 939,183 - HEPCGN_10990 0.74 +0.7 939,240 - HEPCGN_10990 0.81 -0.6 939,290 + HEPCGN_10990 0.88 +0.5 939,327 - -2.4 939,343 - +0.5
Or see this region's nucleotide sequence