Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ugpB and HEPCGN_10880 are separated by 446 nucleotides HEPCGN_10880 and HEPCGN_10885 are separated by 805 nucleotides
HEPCGN_10875: ugpB - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 915,447 to 916,763
ugpB
HEPCGN_10880: HEPCGN_10880 - Truncated transposase, at 917,210 to 917,452
_10880
HEPCGN_10885: HEPCGN_10885 - glycerophosphodiester phosphodiesterase, at 918,258 to 919,601
_10885
Position (kb) 917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 916.224 kb on + strand, within ugpB at 916.224 kb on + strand, within ugpB at 916.284 kb on + strand, within ugpB at 916.320 kb on + strand, within ugpB at 916.397 kb on + strand, within ugpB at 916.398 kb on - strand, within ugpB at 916.408 kb on - strand, within ugpB at 916.609 kb on + strand, within ugpB at 916.610 kb on - strand, within ugpB at 916.610 kb on - strand, within ugpB at 916.770 kb on + strand at 916.781 kb on - strand at 916.801 kb on - strand at 916.869 kb on + strand at 916.903 kb on + strand at 916.903 kb on + strand at 916.904 kb on - strand at 916.971 kb on + strand at 916.971 kb on + strand at 916.971 kb on + strand at 917.251 kb on - strand, within HEPCGN_10880 at 917.359 kb on - strand, within HEPCGN_10880 at 917.445 kb on + strand at 917.445 kb on + strand at 917.508 kb on - strand at 917.527 kb on + strand at 917.898 kb on - strand at 917.916 kb on - strand at 917.921 kb on + strand at 917.921 kb on + strand at 917.921 kb on + strand at 917.922 kb on - strand at 917.946 kb on + strand at 917.968 kb on + strand at 917.968 kb on + strand at 917.968 kb on + strand at 917.968 kb on + strand at 917.968 kb on + strand at 917.969 kb on - strand at 917.969 kb on - strand at 917.970 kb on + strand at 917.971 kb on - strand at 917.991 kb on - strand at 917.991 kb on - strand at 918.070 kb on + strand at 918.070 kb on + strand at 918.070 kb on + strand at 918.070 kb on + strand at 918.070 kb on + strand at 918.071 kb on - strand at 918.072 kb on + strand at 918.072 kb on + strand at 918.073 kb on - strand at 918.073 kb on - strand at 918.095 kb on - strand at 918.100 kb on + strand at 918.127 kb on + strand at 918.174 kb on + strand at 918.175 kb on - strand at 918.183 kb on + strand at 918.205 kb on + strand at 918.206 kb on - strand at 918.223 kb on - strand at 918.252 kb on + strand at 918.253 kb on - strand at 918.284 kb on + strand at 918.285 kb on - strand at 918.286 kb on + strand at 918.286 kb on + strand at 918.287 kb on - strand at 918.435 kb on + strand, within HEPCGN_10885 at 918.435 kb on + strand, within HEPCGN_10885 at 918.435 kb on + strand, within HEPCGN_10885 at 918.436 kb on - strand, within HEPCGN_10885
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 916,224 + ugpB HEPCGN_10875 0.59 +0.7 916,224 + ugpB HEPCGN_10875 0.59 +1.0 916,284 + ugpB HEPCGN_10875 0.64 -1.0 916,320 + ugpB HEPCGN_10875 0.66 +0.4 916,397 + ugpB HEPCGN_10875 0.72 +0.2 916,398 - ugpB HEPCGN_10875 0.72 -0.1 916,408 - ugpB HEPCGN_10875 0.73 -0.3 916,609 + ugpB HEPCGN_10875 0.88 +0.3 916,610 - ugpB HEPCGN_10875 0.88 +0.9 916,610 - ugpB HEPCGN_10875 0.88 -0.1 916,770 + +0.5 916,781 - +2.1 916,801 - +0.3 916,869 + +0.5 916,903 + -2.5 916,903 + +0.4 916,904 - +0.0 916,971 + +0.1 916,971 + +0.5 916,971 + -0.9 917,251 - HEPCGN_10880 0.17 -1.1 917,359 - HEPCGN_10880 0.61 -1.3 917,445 + +0.9 917,445 + -2.2 917,508 - +0.5 917,527 + +0.3 917,898 - +0.1 917,916 - +0.6 917,921 + -0.9 917,921 + +0.1 917,921 + +1.2 917,922 - -0.1 917,946 + -3.1 917,968 + +1.1 917,968 + -0.8 917,968 + +1.7 917,968 + -0.3 917,968 + -0.0 917,969 - +0.2 917,969 - -0.2 917,970 + +0.4 917,971 - +0.3 917,991 - -0.2 917,991 - +1.4 918,070 + -0.0 918,070 + -0.0 918,070 + +0.1 918,070 + -0.2 918,070 + -0.8 918,071 - -0.9 918,072 + +1.3 918,072 + -0.8 918,073 - +0.3 918,073 - +1.1 918,095 - -1.8 918,100 + -0.4 918,127 + +0.3 918,174 + -0.2 918,175 - +0.3 918,183 + +0.1 918,205 + +1.3 918,206 - -0.0 918,223 - +1.2 918,252 + +1.1 918,253 - -0.5 918,284 + +0.5 918,285 - +0.4 918,286 + +1.1 918,286 + -1.2 918,287 - -0.3 918,435 + HEPCGN_10885 0.13 -0.4 918,435 + HEPCGN_10885 0.13 +0.6 918,435 + HEPCGN_10885 0.13 -0.5 918,436 - HEPCGN_10885 0.13 +0.1
Or see this region's nucleotide sequence