Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09920 and intB are separated by 525 nucleotides intB and Leu_trna are separated by 186 nucleotides Leu_trna and ahr are separated by 195 nucleotides
HEPCGN_09920: HEPCGN_09920 - Putative sulfatase, at 729,458 to 729,790
_09920
HEPCGN_09925: intB - Putative protein IntB, at 730,316 to 731,581
intB
HEPCGN_09930: Leu_trna - tRNA-Leu(caa), at 731,768 to 731,852
_trna
HEPCGN_09935: ahr - NADPH-dependent aldehyde reductase Ahr, at 732,048 to 733,067
ahr
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 729.316 kb on + strand at 729.317 kb on - strand at 729.323 kb on + strand at 729.324 kb on - strand at 729.324 kb on - strand at 729.364 kb on + strand at 729.364 kb on + strand at 729.365 kb on - strand at 729.430 kb on + strand at 729.594 kb on + strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.726 kb on + strand, within HEPCGN_09920 at 729.727 kb on - strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.734 kb on - strand, within HEPCGN_09920 at 729.775 kb on + strand at 729.775 kb on + strand at 729.776 kb on - strand at 729.788 kb on + strand at 729.788 kb on + strand at 729.789 kb on - strand at 729.789 kb on - strand at 730.347 kb on + strand at 730.348 kb on - strand at 730.406 kb on + strand at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.538 kb on - strand, within intB at 730.588 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.661 kb on + strand, within intB at 730.662 kb on - strand, within intB at 730.733 kb on + strand, within intB at 730.733 kb on + strand, within intB at 730.734 kb on - strand, within intB at 730.787 kb on - strand, within intB at 730.807 kb on + strand, within intB at 730.873 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.930 kb on + strand, within intB at 730.930 kb on + strand, within intB at 730.930 kb on + strand, within intB at 730.931 kb on - strand, within intB at 730.935 kb on - strand, within intB at 730.943 kb on - strand, within intB at 731.035 kb on - strand, within intB at 731.077 kb on + strand, within intB at 731.126 kb on + strand, within intB at 731.137 kb on + strand, within intB at 731.144 kb on + strand, within intB at 731.148 kb on - strand, within intB at 731.174 kb on - strand, within intB at 731.176 kb on + strand, within intB at 731.176 kb on + strand, within intB at 731.176 kb on + strand, within intB at 731.220 kb on - strand, within intB at 731.288 kb on - strand, within intB at 731.399 kb on + strand, within intB at 731.473 kb on - strand at 731.476 kb on + strand at 731.476 kb on + strand at 731.476 kb on + strand at 731.477 kb on - strand at 731.527 kb on + strand at 731.529 kb on + strand at 731.530 kb on - strand at 731.566 kb on + strand at 731.625 kb on + strand at 731.645 kb on + strand at 731.645 kb on + strand at 731.646 kb on - strand at 731.646 kb on - strand at 731.659 kb on + strand at 731.659 kb on + strand at 731.660 kb on - strand at 731.689 kb on + strand at 731.690 kb on - strand at 731.710 kb on + strand at 731.710 kb on + strand at 731.758 kb on + strand at 731.886 kb on + strand at 731.886 kb on + strand at 731.887 kb on - strand at 731.959 kb on + strand at 731.959 kb on + strand at 732.012 kb on + strand at 732.012 kb on + strand at 732.013 kb on - strand at 732.066 kb on + strand at 732.102 kb on + strand at 732.329 kb on + strand, within ahr at 732.353 kb on + strand, within ahr at 732.401 kb on + strand, within ahr at 732.470 kb on + strand, within ahr at 732.542 kb on + strand, within ahr at 732.568 kb on + strand, within ahr at 732.569 kb on - strand, within ahr
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 729,316 + +0.6 729,317 - +0.1 729,323 + +0.7 729,324 - -0.3 729,324 - +0.5 729,364 + +0.3 729,364 + -0.5 729,365 - -1.6 729,430 + +0.1 729,594 + HEPCGN_09920 0.41 +1.6 729,595 - HEPCGN_09920 0.41 +0.2 729,595 - HEPCGN_09920 0.41 -0.2 729,651 + HEPCGN_09920 0.58 +0.5 729,651 + HEPCGN_09920 0.58 -0.4 729,726 + HEPCGN_09920 0.80 +0.3 729,727 - HEPCGN_09920 0.81 +0.6 729,728 + HEPCGN_09920 0.81 +1.1 729,728 + HEPCGN_09920 0.81 -0.3 729,728 + HEPCGN_09920 0.81 +0.7 729,728 + HEPCGN_09920 0.81 +1.0 729,734 - HEPCGN_09920 0.83 -1.1 729,775 + +2.5 729,775 + +0.5 729,776 - -0.0 729,788 + +1.2 729,788 + -1.0 729,789 - +0.2 729,789 - -0.2 730,347 + -0.6 730,348 - -0.4 730,406 + -0.3 730,449 + intB HEPCGN_09925 0.11 -0.8 730,449 + intB HEPCGN_09925 0.11 -2.8 730,449 + intB HEPCGN_09925 0.11 -0.4 730,538 - intB HEPCGN_09925 0.18 -0.3 730,588 - intB HEPCGN_09925 0.21 -0.0 730,614 - intB HEPCGN_09925 0.24 +1.1 730,614 - intB HEPCGN_09925 0.24 +1.1 730,614 - intB HEPCGN_09925 0.24 -2.0 730,661 + intB HEPCGN_09925 0.27 -1.3 730,662 - intB HEPCGN_09925 0.27 -0.9 730,733 + intB HEPCGN_09925 0.33 +0.5 730,733 + intB HEPCGN_09925 0.33 +0.5 730,734 - intB HEPCGN_09925 0.33 +0.7 730,787 - intB HEPCGN_09925 0.37 +1.1 730,807 + intB HEPCGN_09925 0.39 +0.6 730,873 + intB HEPCGN_09925 0.44 +2.9 730,926 + intB HEPCGN_09925 0.48 +1.5 730,926 + intB HEPCGN_09925 0.48 +1.2 730,926 + intB HEPCGN_09925 0.48 -0.4 730,927 - intB HEPCGN_09925 0.48 -0.9 730,927 - intB HEPCGN_09925 0.48 +0.3 730,927 - intB HEPCGN_09925 0.48 +0.2 730,927 - intB HEPCGN_09925 0.48 -0.3 730,927 - intB HEPCGN_09925 0.48 -3.0 730,927 - intB HEPCGN_09925 0.48 -0.6 730,930 + intB HEPCGN_09925 0.48 +0.9 730,930 + intB HEPCGN_09925 0.48 -0.7 730,930 + intB HEPCGN_09925 0.48 +1.5 730,931 - intB HEPCGN_09925 0.49 -0.6 730,935 - intB HEPCGN_09925 0.49 +0.4 730,943 - intB HEPCGN_09925 0.50 +0.4 731,035 - intB HEPCGN_09925 0.57 +0.6 731,077 + intB HEPCGN_09925 0.60 +0.0 731,126 + intB HEPCGN_09925 0.64 -0.5 731,137 + intB HEPCGN_09925 0.65 -0.5 731,144 + intB HEPCGN_09925 0.65 +0.6 731,148 - intB HEPCGN_09925 0.66 -1.6 731,174 - intB HEPCGN_09925 0.68 +4.5 731,176 + intB HEPCGN_09925 0.68 +1.0 731,176 + intB HEPCGN_09925 0.68 +0.2 731,176 + intB HEPCGN_09925 0.68 -0.1 731,220 - intB HEPCGN_09925 0.71 -1.1 731,288 - intB HEPCGN_09925 0.77 -0.6 731,399 + intB HEPCGN_09925 0.86 -0.2 731,473 - +0.7 731,476 + +0.0 731,476 + +0.0 731,476 + -0.6 731,477 - +0.1 731,527 + -0.0 731,529 + +0.0 731,530 - -0.9 731,566 + +1.0 731,625 + +0.3 731,645 + +0.5 731,645 + -0.7 731,646 - -0.3 731,646 - -1.0 731,659 + +1.1 731,659 + -0.6 731,660 - +0.9 731,689 + -0.3 731,690 - -0.4 731,710 + -2.7 731,710 + +0.0 731,758 + -2.3 731,886 + +2.5 731,886 + +0.6 731,887 - -0.9 731,959 + -0.5 731,959 + +1.1 732,012 + +1.4 732,012 + +0.8 732,013 - -1.9 732,066 + +0.3 732,102 + -0.3 732,329 + ahr HEPCGN_09935 0.28 -0.7 732,353 + ahr HEPCGN_09935 0.30 +1.2 732,401 + ahr HEPCGN_09935 0.35 -0.6 732,470 + ahr HEPCGN_09935 0.41 +0.2 732,542 + ahr HEPCGN_09935 0.48 +0.1 732,568 + ahr HEPCGN_09935 0.51 -0.2 732,569 - ahr HEPCGN_09935 0.51 +0.2
Or see this region's nucleotide sequence