Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjU and ytjA are separated by 121 nucleotides ytjA and osmY are separated by 126 nucleotides osmY and prfC are separated by 392 nucleotides
HEPCGN_09270: yjjU - Uncharacterized protein YjjU, at 599,414 to 600,487
yjjU
HEPCGN_09275: ytjA - UPF0391 membrane protein YtjA, at 600,609 to 600,770
ytjA
HEPCGN_09280: osmY - molecular chaperone OsmY, at 600,897 to 601,502
osmY
HEPCGN_09285: prfC - peptide chain release factor 3, at 601,895 to 603,484
prfC
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 599.929 kb on + strand, within yjjU at 599.946 kb on + strand, within yjjU at 599.946 kb on + strand, within yjjU at 599.950 kb on + strand, within yjjU at 599.950 kb on + strand, within yjjU at 599.951 kb on - strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.954 kb on - strand, within yjjU at 599.954 kb on - strand, within yjjU at 600.032 kb on - strand, within yjjU at 600.083 kb on - strand, within yjjU at 600.083 kb on - strand, within yjjU at 600.084 kb on + strand, within yjjU at 600.084 kb on + strand, within yjjU at 600.085 kb on - strand, within yjjU at 600.108 kb on - strand, within yjjU at 600.234 kb on + strand, within yjjU at 600.279 kb on + strand, within yjjU at 600.279 kb on + strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.349 kb on + strand, within yjjU at 600.350 kb on - strand, within yjjU at 600.474 kb on - strand at 600.527 kb on - strand at 600.536 kb on + strand at 600.536 kb on + strand at 600.536 kb on + strand at 600.540 kb on - strand at 600.750 kb on + strand, within ytjA at 600.784 kb on - strand at 600.788 kb on + strand at 600.788 kb on + strand at 600.792 kb on + strand at 600.792 kb on + strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.988 kb on - strand, within osmY at 601.272 kb on - strand, within osmY at 601.358 kb on + strand, within osmY at 601.358 kb on + strand, within osmY at 601.371 kb on - strand, within osmY at 601.459 kb on - strand at 601.459 kb on - strand at 601.459 kb on - strand at 601.459 kb on - strand at 601.459 kb on - strand at 601.496 kb on + strand at 601.496 kb on + strand at 601.509 kb on - strand at 601.516 kb on + strand at 601.517 kb on - strand at 601.629 kb on + strand at 601.630 kb on - strand at 601.639 kb on + strand at 601.690 kb on + strand at 601.694 kb on + strand at 601.695 kb on - strand at 601.700 kb on + strand at 601.701 kb on - strand at 601.701 kb on - strand at 601.704 kb on + strand at 601.704 kb on + strand at 601.704 kb on + strand at 601.704 kb on + strand at 601.819 kb on - strand at 601.842 kb on + strand at 601.977 kb on + strand at 601.978 kb on - strand at 602.023 kb on + strand at 602.097 kb on + strand, within prfC at 602.235 kb on - strand, within prfC at 602.440 kb on + strand, within prfC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 599,929 + yjjU HEPCGN_09270 0.48 +2.2 599,946 + yjjU HEPCGN_09270 0.50 +1.8 599,946 + yjjU HEPCGN_09270 0.50 -0.7 599,950 + yjjU HEPCGN_09270 0.50 -0.4 599,950 + yjjU HEPCGN_09270 0.50 +0.3 599,951 - yjjU HEPCGN_09270 0.50 +1.9 599,953 + yjjU HEPCGN_09270 0.50 +0.9 599,953 + yjjU HEPCGN_09270 0.50 +0.5 599,953 + yjjU HEPCGN_09270 0.50 -0.1 599,954 - yjjU HEPCGN_09270 0.50 +0.0 599,954 - yjjU HEPCGN_09270 0.50 -1.2 600,032 - yjjU HEPCGN_09270 0.58 +0.3 600,083 - yjjU HEPCGN_09270 0.62 +0.1 600,083 - yjjU HEPCGN_09270 0.62 +0.5 600,084 + yjjU HEPCGN_09270 0.62 -0.4 600,084 + yjjU HEPCGN_09270 0.62 +0.3 600,085 - yjjU HEPCGN_09270 0.62 -1.3 600,108 - yjjU HEPCGN_09270 0.65 +0.2 600,234 + yjjU HEPCGN_09270 0.76 +0.0 600,279 + yjjU HEPCGN_09270 0.81 +0.3 600,279 + yjjU HEPCGN_09270 0.81 +0.0 600,280 - yjjU HEPCGN_09270 0.81 +1.2 600,280 - yjjU HEPCGN_09270 0.81 +1.2 600,280 - yjjU HEPCGN_09270 0.81 +0.1 600,349 + yjjU HEPCGN_09270 0.87 +1.1 600,350 - yjjU HEPCGN_09270 0.87 -0.3 600,474 - -0.4 600,527 - -0.5 600,536 + +0.3 600,536 + -1.3 600,536 + +0.2 600,540 - -1.7 600,750 + ytjA HEPCGN_09275 0.87 +0.5 600,784 - +0.0 600,788 + -0.2 600,788 + -0.5 600,792 + +0.4 600,792 + -0.1 600,793 - +0.1 600,793 - -1.2 600,793 - -0.8 600,988 - osmY HEPCGN_09280 0.15 -0.1 601,272 - osmY HEPCGN_09280 0.62 +0.4 601,358 + osmY HEPCGN_09280 0.76 -0.7 601,358 + osmY HEPCGN_09280 0.76 -0.7 601,371 - osmY HEPCGN_09280 0.78 -0.4 601,459 - +0.3 601,459 - -0.1 601,459 - +0.2 601,459 - -0.4 601,459 - -0.9 601,496 + +0.2 601,496 + +2.5 601,509 - -1.0 601,516 + +0.1 601,517 - -0.7 601,629 + +0.4 601,630 - +1.2 601,639 + +0.6 601,690 + -1.7 601,694 + -1.1 601,695 - -0.3 601,700 + -1.5 601,701 - +0.8 601,701 - +0.6 601,704 + -0.6 601,704 + +1.1 601,704 + -1.6 601,704 + -0.2 601,819 - -0.1 601,842 + +0.0 601,977 + -0.8 601,978 - -2.1 602,023 + -0.5 602,097 + prfC HEPCGN_09285 0.13 -0.4 602,235 - prfC HEPCGN_09285 0.21 +0.8 602,440 + prfC HEPCGN_09285 0.34 -2.1
Or see this region's nucleotide sequence