Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09075 and mog are separated by 104 nucleotides mog and HEPCGN_09085 are separated by 114 nucleotides HEPCGN_09085 and yaaJ are separated by 278 nucleotides
HEPCGN_09075: HEPCGN_09075 - IS4-like element IS4 family transposase, at 561,411 to 562,739
_09075
HEPCGN_09080: mog - molybdopterin adenylyltransferase, at 562,844 to 563,431
mog
HEPCGN_09085: HEPCGN_09085 - transaldolase B, at 563,546 to 564,499
_09085
HEPCGN_09090: yaaJ - Uncharacterized transporter YaaJ, at 564,778 to 566,208
yaaJ
Position (kb) 563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.914 kb on + strand, within mog at 562.914 kb on + strand, within mog at 562.947 kb on - strand, within mog at 562.994 kb on + strand, within mog at 562.995 kb on - strand, within mog at 562.995 kb on - strand, within mog at 563.014 kb on + strand, within mog at 563.014 kb on + strand, within mog at 563.015 kb on - strand, within mog at 563.042 kb on - strand, within mog at 563.417 kb on - strand at 563.421 kb on - strand at 563.421 kb on - strand at 563.425 kb on + strand at 563.425 kb on + strand at 563.426 kb on - strand at 563.426 kb on - strand at 563.426 kb on - strand at 563.473 kb on - strand at 563.511 kb on + strand at 563.538 kb on - strand at 563.547 kb on + strand at 563.606 kb on - strand at 563.624 kb on + strand at 563.625 kb on - strand at 563.645 kb on - strand, within HEPCGN_09085 at 563.706 kb on + strand, within HEPCGN_09085 at 563.707 kb on - strand, within HEPCGN_09085 at 563.707 kb on - strand, within HEPCGN_09085 at 563.716 kb on + strand, within HEPCGN_09085 at 563.716 kb on + strand, within HEPCGN_09085 at 563.716 kb on + strand, within HEPCGN_09085 at 563.717 kb on - strand, within HEPCGN_09085 at 563.816 kb on - strand, within HEPCGN_09085 at 563.863 kb on - strand, within HEPCGN_09085 at 563.865 kb on + strand, within HEPCGN_09085 at 563.871 kb on + strand, within HEPCGN_09085 at 563.871 kb on + strand, within HEPCGN_09085 at 563.956 kb on + strand, within HEPCGN_09085 at 563.957 kb on - strand, within HEPCGN_09085 at 564.040 kb on + strand, within HEPCGN_09085 at 564.094 kb on + strand, within HEPCGN_09085 at 564.128 kb on - strand, within HEPCGN_09085 at 564.128 kb on - strand, within HEPCGN_09085 at 564.145 kb on - strand, within HEPCGN_09085 at 564.193 kb on - strand, within HEPCGN_09085 at 564.264 kb on - strand, within HEPCGN_09085 at 564.468 kb on + strand at 564.503 kb on - strand at 564.503 kb on - strand at 564.506 kb on - strand at 564.506 kb on - strand at 564.537 kb on + strand at 564.537 kb on + strand at 564.672 kb on + strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.673 kb on - strand at 564.702 kb on + strand at 564.707 kb on + strand at 564.707 kb on + strand at 564.707 kb on + strand at 564.708 kb on - strand at 564.708 kb on - strand at 564.708 kb on - strand at 564.709 kb on + strand at 564.710 kb on - strand at 564.711 kb on + strand at 564.711 kb on + strand at 564.711 kb on + strand at 564.719 kb on - strand at 564.773 kb on + strand at 564.798 kb on + strand at 564.833 kb on - strand at 564.924 kb on + strand, within yaaJ at 564.973 kb on - strand, within yaaJ at 565.123 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.171 kb on + strand, within yaaJ at 565.172 kb on - strand, within yaaJ at 565.173 kb on + strand, within yaaJ at 565.244 kb on + strand, within yaaJ at 565.326 kb on + strand, within yaaJ at 565.439 kb on + strand, within yaaJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 562,914 + mog HEPCGN_09080 0.12 +0.1 562,914 + mog HEPCGN_09080 0.12 +0.7 562,947 - mog HEPCGN_09080 0.18 -0.6 562,994 + mog HEPCGN_09080 0.26 -0.8 562,995 - mog HEPCGN_09080 0.26 -0.4 562,995 - mog HEPCGN_09080 0.26 +0.5 563,014 + mog HEPCGN_09080 0.29 -0.2 563,014 + mog HEPCGN_09080 0.29 +0.3 563,015 - mog HEPCGN_09080 0.29 +1.1 563,042 - mog HEPCGN_09080 0.34 -1.9 563,417 - -0.7 563,421 - -0.1 563,421 - +0.3 563,425 + -1.1 563,425 + -2.5 563,426 - +0.6 563,426 - +0.5 563,426 - +0.1 563,473 - +1.0 563,511 + -0.4 563,538 - +0.2 563,547 + -1.4 563,606 - -1.1 563,624 + +0.2 563,625 - -0.3 563,645 - HEPCGN_09085 0.10 +2.4 563,706 + HEPCGN_09085 0.17 -0.4 563,707 - HEPCGN_09085 0.17 -1.0 563,707 - HEPCGN_09085 0.17 +0.5 563,716 + HEPCGN_09085 0.18 +0.8 563,716 + HEPCGN_09085 0.18 -1.2 563,716 + HEPCGN_09085 0.18 -2.3 563,717 - HEPCGN_09085 0.18 -1.0 563,816 - HEPCGN_09085 0.28 -1.2 563,863 - HEPCGN_09085 0.33 -1.8 563,865 + HEPCGN_09085 0.33 -1.2 563,871 + HEPCGN_09085 0.34 -1.6 563,871 + HEPCGN_09085 0.34 +0.6 563,956 + HEPCGN_09085 0.43 -1.9 563,957 - HEPCGN_09085 0.43 -0.5 564,040 + HEPCGN_09085 0.52 -1.5 564,094 + HEPCGN_09085 0.57 -1.4 564,128 - HEPCGN_09085 0.61 -0.1 564,128 - HEPCGN_09085 0.61 -1.5 564,145 - HEPCGN_09085 0.63 -0.2 564,193 - HEPCGN_09085 0.68 +0.4 564,264 - HEPCGN_09085 0.75 -0.3 564,468 + -0.2 564,503 - -2.9 564,503 - +0.1 564,506 - -1.3 564,506 - -0.9 564,537 + -0.5 564,537 + +0.6 564,672 + +0.1 564,673 - -0.7 564,673 - -0.9 564,673 - -0.0 564,673 - -0.1 564,673 - -0.3 564,702 + +1.4 564,707 + -0.1 564,707 + -0.1 564,707 + -0.5 564,708 - +0.1 564,708 - -0.0 564,708 - -0.5 564,709 + +0.3 564,710 - -1.0 564,711 + +2.1 564,711 + +0.7 564,711 + -0.3 564,719 - -0.9 564,773 + -0.9 564,798 + -1.6 564,833 - +0.5 564,924 + yaaJ HEPCGN_09090 0.10 +0.8 564,973 - yaaJ HEPCGN_09090 0.14 -0.0 565,123 + yaaJ HEPCGN_09090 0.24 +0.3 565,171 + yaaJ HEPCGN_09090 0.27 -0.4 565,171 + yaaJ HEPCGN_09090 0.27 +1.3 565,171 + yaaJ HEPCGN_09090 0.27 -0.6 565,171 + yaaJ HEPCGN_09090 0.27 -2.3 565,172 - yaaJ HEPCGN_09090 0.28 -0.1 565,173 + yaaJ HEPCGN_09090 0.28 -2.6 565,244 + yaaJ HEPCGN_09090 0.33 -0.6 565,326 + yaaJ HEPCGN_09090 0.38 -0.0 565,439 + yaaJ HEPCGN_09090 0.46 -2.8
Or see this region's nucleotide sequence