Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahN and HEPCGN_07505 are separated by 24 nucleotides HEPCGN_07505 and yahL are separated by 413 nucleotides yahL and yahK are separated by 242 nucleotides
HEPCGN_07500: yahN - Uncharacterized membrane protein YahN, at 238,991 to 239,623
yahN
HEPCGN_07505: HEPCGN_07505 - Uncharacterized protein YahM, at 239,648 to 239,884
_07505
HEPCGN_07510: yahL - Uncharacterized protein YahL, at 240,298 to 241,113
yahL
HEPCGN_07515: yahK - NADPH-dependent aldehyde reductase YahK, at 241,356 to 242,405
yahK
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.299 kb on - strand, within yahN at 239.324 kb on + strand, within yahN at 239.325 kb on - strand, within yahN at 239.346 kb on + strand, within yahN at 239.409 kb on + strand, within yahN at 239.492 kb on - strand, within yahN at 239.528 kb on + strand, within yahN at 239.537 kb on - strand, within yahN at 239.537 kb on - strand, within yahN at 239.539 kb on - strand, within yahN at 239.539 kb on - strand, within yahN at 239.572 kb on + strand at 239.572 kb on + strand at 239.573 kb on - strand at 239.573 kb on - strand at 239.645 kb on + strand at 239.645 kb on + strand at 239.708 kb on - strand, within HEPCGN_07505 at 239.722 kb on + strand, within HEPCGN_07505 at 239.723 kb on - strand, within HEPCGN_07505 at 239.723 kb on - strand, within HEPCGN_07505 at 239.841 kb on - strand, within HEPCGN_07505 at 239.908 kb on - strand at 239.908 kb on - strand at 239.946 kb on + strand at 240.059 kb on + strand at 240.119 kb on + strand at 240.121 kb on + strand at 240.121 kb on + strand at 240.223 kb on - strand at 240.341 kb on + strand at 240.385 kb on + strand, within yahL at 240.464 kb on + strand, within yahL at 240.740 kb on + strand, within yahL at 240.741 kb on - strand, within yahL at 240.742 kb on + strand, within yahL at 240.854 kb on - strand, within yahL at 241.255 kb on - strand at 241.423 kb on + strand at 241.458 kb on + strand at 241.459 kb on - strand at 241.529 kb on + strand, within yahK at 241.643 kb on + strand, within yahK at 241.644 kb on - strand, within yahK at 241.659 kb on - strand, within yahK at 241.659 kb on - strand, within yahK at 241.671 kb on + strand, within yahK at 241.671 kb on + strand, within yahK at 241.736 kb on + strand, within yahK at 241.979 kb on + strand, within yahK at 242.033 kb on + strand, within yahK at 242.063 kb on + strand, within yahK at 242.065 kb on + strand, within yahK at 242.066 kb on - strand, within yahK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 239,299 - yahN HEPCGN_07500 0.49 -0.1 239,324 + yahN HEPCGN_07500 0.53 +0.3 239,325 - yahN HEPCGN_07500 0.53 +0.2 239,346 + yahN HEPCGN_07500 0.56 +0.4 239,409 + yahN HEPCGN_07500 0.66 +0.2 239,492 - yahN HEPCGN_07500 0.79 +0.5 239,528 + yahN HEPCGN_07500 0.85 +0.0 239,537 - yahN HEPCGN_07500 0.86 -0.3 239,537 - yahN HEPCGN_07500 0.86 +0.7 239,539 - yahN HEPCGN_07500 0.87 -0.4 239,539 - yahN HEPCGN_07500 0.87 +0.3 239,572 + -0.7 239,572 + +0.2 239,573 - -0.6 239,573 - -0.5 239,645 + +1.6 239,645 + -0.1 239,708 - HEPCGN_07505 0.25 -0.5 239,722 + HEPCGN_07505 0.31 -1.7 239,723 - HEPCGN_07505 0.32 +0.0 239,723 - HEPCGN_07505 0.32 +1.8 239,841 - HEPCGN_07505 0.81 -1.4 239,908 - -0.5 239,908 - +0.2 239,946 + -1.9 240,059 + -0.3 240,119 + -0.1 240,121 + -1.3 240,121 + +0.0 240,223 - -2.0 240,341 + +0.3 240,385 + yahL HEPCGN_07510 0.11 +0.5 240,464 + yahL HEPCGN_07510 0.20 -1.3 240,740 + yahL HEPCGN_07510 0.54 -0.9 240,741 - yahL HEPCGN_07510 0.54 -1.6 240,742 + yahL HEPCGN_07510 0.54 +2.3 240,854 - yahL HEPCGN_07510 0.68 -2.4 241,255 - -0.5 241,423 + +0.9 241,458 + -0.5 241,459 - -0.8 241,529 + yahK HEPCGN_07515 0.16 -1.3 241,643 + yahK HEPCGN_07515 0.27 +0.5 241,644 - yahK HEPCGN_07515 0.27 -0.0 241,659 - yahK HEPCGN_07515 0.29 -0.1 241,659 - yahK HEPCGN_07515 0.29 -1.0 241,671 + yahK HEPCGN_07515 0.30 +0.7 241,671 + yahK HEPCGN_07515 0.30 +0.2 241,736 + yahK HEPCGN_07515 0.36 -0.3 241,979 + yahK HEPCGN_07515 0.59 -0.3 242,033 + yahK HEPCGN_07515 0.64 -2.7 242,063 + yahK HEPCGN_07515 0.67 +0.7 242,065 + yahK HEPCGN_07515 0.68 +0.4 242,066 - yahK HEPCGN_07515 0.68 -2.1
Or see this region's nucleotide sequence