Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dtpA and HEPCGN_05905 are separated by 282 nucleotides HEPCGN_05905 and nth are separated by 127 nucleotides nth and rsxE overlap by 1 nucleotides
HEPCGN_05900: dtpA - dipeptide/tripeptide permease DtpA, at 1,051,020 to 1,052,522
dtpA
HEPCGN_05905: HEPCGN_05905 - hypothetical protein, at 1,052,805 to 1,053,005
_05905
HEPCGN_05910: nth - endonuclease III, at 1,053,133 to 1,053,768
nth
HEPCGN_05915: rsxE - electron transport complex subunit RsxE, at 1,053,768 to 1,054,463
rsxE
Position (kb) 1052
1053
1054 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1051.878 kb on - strand, within dtpA at 1052.057 kb on - strand, within dtpA at 1052.059 kb on + strand, within dtpA at 1052.059 kb on + strand, within dtpA at 1052.060 kb on - strand, within dtpA at 1052.060 kb on - strand, within dtpA at 1052.060 kb on - strand, within dtpA at 1052.101 kb on + strand, within dtpA at 1052.101 kb on + strand, within dtpA at 1052.102 kb on - strand, within dtpA at 1052.108 kb on + strand, within dtpA at 1052.108 kb on + strand, within dtpA at 1052.176 kb on + strand, within dtpA at 1052.177 kb on - strand, within dtpA at 1052.177 kb on - strand, within dtpA at 1052.177 kb on - strand, within dtpA at 1052.218 kb on + strand, within dtpA at 1052.237 kb on + strand, within dtpA at 1052.250 kb on - strand, within dtpA at 1052.272 kb on - strand, within dtpA at 1052.272 kb on - strand, within dtpA at 1052.283 kb on + strand, within dtpA at 1052.325 kb on - strand, within dtpA at 1052.393 kb on + strand at 1052.403 kb on + strand at 1052.453 kb on - strand at 1052.526 kb on + strand at 1052.538 kb on + strand at 1052.572 kb on + strand at 1052.578 kb on + strand at 1052.600 kb on + strand at 1052.602 kb on + strand at 1052.624 kb on + strand at 1052.635 kb on - strand at 1052.635 kb on - strand at 1052.876 kb on + strand, within HEPCGN_05905 at 1052.997 kb on - strand at 1053.177 kb on + strand at 1053.333 kb on + strand, within nth at 1053.391 kb on + strand, within nth at 1053.469 kb on - strand, within nth at 1053.482 kb on - strand, within nth at 1053.486 kb on + strand, within nth at 1053.487 kb on - strand, within nth at 1053.525 kb on - strand, within nth at 1053.546 kb on - strand, within nth at 1053.606 kb on - strand, within nth at 1053.853 kb on + strand, within rsxE at 1053.965 kb on + strand, within rsxE at 1053.970 kb on - strand, within rsxE at 1053.970 kb on - strand, within rsxE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 1,051,878 - dtpA HEPCGN_05900 0.57 -1.3 1,052,057 - dtpA HEPCGN_05900 0.69 -0.6 1,052,059 + dtpA HEPCGN_05900 0.69 -0.6 1,052,059 + dtpA HEPCGN_05900 0.69 -0.8 1,052,060 - dtpA HEPCGN_05900 0.69 -0.2 1,052,060 - dtpA HEPCGN_05900 0.69 +1.4 1,052,060 - dtpA HEPCGN_05900 0.69 -2.0 1,052,101 + dtpA HEPCGN_05900 0.72 +0.2 1,052,101 + dtpA HEPCGN_05900 0.72 -0.2 1,052,102 - dtpA HEPCGN_05900 0.72 -0.9 1,052,108 + dtpA HEPCGN_05900 0.72 -3.8 1,052,108 + dtpA HEPCGN_05900 0.72 +2.5 1,052,176 + dtpA HEPCGN_05900 0.77 -2.8 1,052,177 - dtpA HEPCGN_05900 0.77 +1.1 1,052,177 - dtpA HEPCGN_05900 0.77 -0.4 1,052,177 - dtpA HEPCGN_05900 0.77 -2.3 1,052,218 + dtpA HEPCGN_05900 0.80 +0.5 1,052,237 + dtpA HEPCGN_05900 0.81 -1.0 1,052,250 - dtpA HEPCGN_05900 0.82 -0.4 1,052,272 - dtpA HEPCGN_05900 0.83 +0.0 1,052,272 - dtpA HEPCGN_05900 0.83 -0.3 1,052,283 + dtpA HEPCGN_05900 0.84 -0.9 1,052,325 - dtpA HEPCGN_05900 0.87 +0.2 1,052,393 + +0.9 1,052,403 + +0.2 1,052,453 - -0.3 1,052,526 + +2.2 1,052,538 + -0.5 1,052,572 + -0.8 1,052,578 + -0.6 1,052,600 + -1.0 1,052,602 + -0.1 1,052,624 + -1.7 1,052,635 - +0.1 1,052,635 - +1.3 1,052,876 + HEPCGN_05905 0.35 -2.0 1,052,997 - -0.0 1,053,177 + +0.9 1,053,333 + nth HEPCGN_05910 0.31 +2.9 1,053,391 + nth HEPCGN_05910 0.41 +0.1 1,053,469 - nth HEPCGN_05910 0.53 +0.9 1,053,482 - nth HEPCGN_05910 0.55 -0.4 1,053,486 + nth HEPCGN_05910 0.56 -0.1 1,053,487 - nth HEPCGN_05910 0.56 +0.4 1,053,525 - nth HEPCGN_05910 0.62 +0.8 1,053,546 - nth HEPCGN_05910 0.65 -1.5 1,053,606 - nth HEPCGN_05910 0.74 +0.6 1,053,853 + rsxE HEPCGN_05915 0.12 -1.5 1,053,965 + rsxE HEPCGN_05915 0.28 +0.5 1,053,970 - rsxE HEPCGN_05915 0.29 -0.1 1,053,970 - rsxE HEPCGN_05915 0.29 +0.0
Or see this region's nucleotide sequence