Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nemA and nemR are separated by 36 nucleotides nemR and ydhL are separated by 102 nucleotides ydhL and ydhF are separated by 48 nucleotides
HEPCGN_05820: nemA - N-ethylmaleimide reductase, at 1,037,536 to 1,038,633
nemA
HEPCGN_05825: nemR - DNA-binding transcriptional regulator NemR, at 1,038,670 to 1,039,269
nemR
HEPCGN_05830: ydhL - Uncharacterized protein YdhL, at 1,039,372 to 1,039,611
ydhL
HEPCGN_05835: ydhF - Oxidoreductase YdhF, at 1,039,660 to 1,040,556
ydhF
Position (kb) 1038
1039
1040 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1037.684 kb on - strand, within nemA at 1037.723 kb on + strand, within nemA at 1037.723 kb on + strand, within nemA at 1037.723 kb on + strand, within nemA at 1037.724 kb on - strand, within nemA at 1037.724 kb on - strand, within nemA at 1037.724 kb on - strand, within nemA at 1037.790 kb on - strand, within nemA at 1037.823 kb on + strand, within nemA at 1037.823 kb on + strand, within nemA at 1037.824 kb on - strand, within nemA at 1037.831 kb on + strand, within nemA at 1037.831 kb on + strand, within nemA at 1037.832 kb on - strand, within nemA at 1037.868 kb on - strand, within nemA at 1037.899 kb on - strand, within nemA at 1037.899 kb on - strand, within nemA at 1038.074 kb on + strand, within nemA at 1038.240 kb on + strand, within nemA at 1038.343 kb on - strand, within nemA at 1038.406 kb on - strand, within nemA at 1038.468 kb on + strand, within nemA at 1038.500 kb on + strand, within nemA at 1038.633 kb on + strand at 1038.633 kb on + strand at 1038.633 kb on + strand at 1038.773 kb on - strand, within nemR at 1038.901 kb on - strand, within nemR at 1038.944 kb on - strand, within nemR at 1039.030 kb on - strand, within nemR at 1039.127 kb on + strand, within nemR at 1039.284 kb on + strand at 1039.340 kb on + strand at 1039.385 kb on + strand at 1039.386 kb on - strand at 1039.482 kb on + strand, within ydhL at 1039.646 kb on - strand at 1039.674 kb on + strand at 1039.675 kb on - strand at 1039.677 kb on + strand at 1039.678 kb on - strand at 1039.744 kb on - strand at 1039.818 kb on + strand, within ydhF at 1039.823 kb on - strand, within ydhF at 1039.905 kb on + strand, within ydhF at 1039.905 kb on + strand, within ydhF at 1039.905 kb on + strand, within ydhF at 1039.905 kb on + strand, within ydhF at 1039.954 kb on + strand, within ydhF at 1039.980 kb on + strand, within ydhF at 1040.005 kb on - strand, within ydhF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 1,037,684 - nemA HEPCGN_05820 0.13 -0.7 1,037,723 + nemA HEPCGN_05820 0.17 +0.8 1,037,723 + nemA HEPCGN_05820 0.17 -0.6 1,037,723 + nemA HEPCGN_05820 0.17 -0.3 1,037,724 - nemA HEPCGN_05820 0.17 -1.2 1,037,724 - nemA HEPCGN_05820 0.17 +0.5 1,037,724 - nemA HEPCGN_05820 0.17 -0.8 1,037,790 - nemA HEPCGN_05820 0.23 +0.1 1,037,823 + nemA HEPCGN_05820 0.26 -0.9 1,037,823 + nemA HEPCGN_05820 0.26 -1.1 1,037,824 - nemA HEPCGN_05820 0.26 -0.3 1,037,831 + nemA HEPCGN_05820 0.27 +0.3 1,037,831 + nemA HEPCGN_05820 0.27 -0.4 1,037,832 - nemA HEPCGN_05820 0.27 +0.3 1,037,868 - nemA HEPCGN_05820 0.30 -0.3 1,037,899 - nemA HEPCGN_05820 0.33 +0.7 1,037,899 - nemA HEPCGN_05820 0.33 +0.2 1,038,074 + nemA HEPCGN_05820 0.49 -0.5 1,038,240 + nemA HEPCGN_05820 0.64 -0.1 1,038,343 - nemA HEPCGN_05820 0.73 +0.1 1,038,406 - nemA HEPCGN_05820 0.79 +0.9 1,038,468 + nemA HEPCGN_05820 0.85 +0.8 1,038,500 + nemA HEPCGN_05820 0.88 +0.6 1,038,633 + +2.0 1,038,633 + -0.1 1,038,633 + -0.5 1,038,773 - nemR HEPCGN_05825 0.17 -0.3 1,038,901 - nemR HEPCGN_05825 0.39 -1.0 1,038,944 - nemR HEPCGN_05825 0.46 -4.0 1,039,030 - nemR HEPCGN_05825 0.60 +0.3 1,039,127 + nemR HEPCGN_05825 0.76 -0.6 1,039,284 + -0.1 1,039,340 + -1.6 1,039,385 + +1.4 1,039,386 - -0.5 1,039,482 + ydhL HEPCGN_05830 0.46 -0.1 1,039,646 - -3.3 1,039,674 + +0.1 1,039,675 - -0.3 1,039,677 + +0.5 1,039,678 - +4.8 1,039,744 - +0.9 1,039,818 + ydhF HEPCGN_05835 0.18 -0.3 1,039,823 - ydhF HEPCGN_05835 0.18 +0.1 1,039,905 + ydhF HEPCGN_05835 0.27 +0.0 1,039,905 + ydhF HEPCGN_05835 0.27 -0.9 1,039,905 + ydhF HEPCGN_05835 0.27 +0.3 1,039,905 + ydhF HEPCGN_05835 0.27 +0.5 1,039,954 + ydhF HEPCGN_05835 0.33 -0.9 1,039,980 + ydhF HEPCGN_05835 0.36 -2.0 1,040,005 - ydhF HEPCGN_05835 0.38 -0.7
Or see this region's nucleotide sequence