Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05600

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiM and HEPCGN_05600 are separated by 99 nucleotidesHEPCGN_05600 and ydiK are separated by 428 nucleotides HEPCGN_05595: ydiM - Inner membrane transport protein YdiM, at 993,008 to 994,222 ydiM HEPCGN_05600: HEPCGN_05600 - DUF1870 domain-containing protein, at 994,322 to 994,678 _05600 HEPCGN_05610: ydiK - AI-2E family transporter YdiK, at 995,107 to 996,219 ydiK Position (kb) 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.382 kb on - strand, within ydiMat 993.440 kb on + strand, within ydiMat 993.440 kb on + strand, within ydiMat 993.469 kb on + strand, within ydiMat 993.470 kb on - strand, within ydiMat 993.470 kb on - strand, within ydiMat 993.476 kb on + strand, within ydiMat 993.549 kb on + strand, within ydiMat 993.568 kb on + strand, within ydiMat 993.570 kb on + strand, within ydiMat 993.570 kb on + strand, within ydiMat 993.571 kb on - strand, within ydiMat 993.577 kb on - strand, within ydiMat 993.578 kb on + strand, within ydiMat 993.585 kb on + strand, within ydiMat 993.585 kb on + strand, within ydiMat 993.594 kb on - strand, within ydiMat 993.651 kb on - strand, within ydiMat 993.873 kb on + strand, within ydiMat 993.943 kb on + strand, within ydiMat 993.978 kb on + strand, within ydiMat 994.031 kb on + strand, within ydiMat 994.055 kb on + strand, within ydiMat 994.056 kb on - strand, within ydiMat 994.056 kb on - strand, within ydiMat 994.081 kb on + strand, within ydiMat 994.105 kb on + strandat 994.106 kb on - strandat 994.135 kb on - strandat 994.206 kb on + strandat 994.229 kb on + strandat 994.229 kb on + strandat 994.230 kb on - strandat 994.292 kb on + strandat 994.323 kb on + strandat 994.350 kb on + strandat 994.350 kb on + strandat 994.351 kb on - strandat 994.520 kb on - strand, within HEPCGN_05600at 994.630 kb on + strand, within HEPCGN_05600at 994.630 kb on + strand, within HEPCGN_05600at 994.700 kb on - strandat 994.707 kb on - strandat 994.718 kb on - strandat 994.926 kb on + strandat 994.930 kb on - strandat 995.024 kb on + strandat 995.108 kb on + strandat 995.109 kb on - strandat 995.380 kb on + strand, within ydiKat 995.380 kb on + strand, within ydiKat 995.479 kb on + strand, within ydiKat 995.502 kb on - strand, within ydiKat 995.502 kb on - strand, within ydiKat 995.548 kb on + strand, within ydiKat 995.552 kb on - strand, within ydiK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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993,382 - ydiM HEPCGN_05595 0.31 -0.7
993,440 + ydiM HEPCGN_05595 0.36 +0.2
993,440 + ydiM HEPCGN_05595 0.36 +0.2
993,469 + ydiM HEPCGN_05595 0.38 +0.2
993,470 - ydiM HEPCGN_05595 0.38 -0.6
993,470 - ydiM HEPCGN_05595 0.38 +0.6
993,476 + ydiM HEPCGN_05595 0.39 -1.3
993,549 + ydiM HEPCGN_05595 0.45 -0.8
993,568 + ydiM HEPCGN_05595 0.46 -0.5
993,570 + ydiM HEPCGN_05595 0.46 +0.3
993,570 + ydiM HEPCGN_05595 0.46 +0.3
993,571 - ydiM HEPCGN_05595 0.46 -1.1
993,577 - ydiM HEPCGN_05595 0.47 -0.6
993,578 + ydiM HEPCGN_05595 0.47 -3.7
993,585 + ydiM HEPCGN_05595 0.47 +0.7
993,585 + ydiM HEPCGN_05595 0.47 +0.7
993,594 - ydiM HEPCGN_05595 0.48 -1.2
993,651 - ydiM HEPCGN_05595 0.53 +0.8
993,873 + ydiM HEPCGN_05595 0.71 -1.1
993,943 + ydiM HEPCGN_05595 0.77 +2.2
993,978 + ydiM HEPCGN_05595 0.80 +2.0
994,031 + ydiM HEPCGN_05595 0.84 -1.1
994,055 + ydiM HEPCGN_05595 0.86 -0.8
994,056 - ydiM HEPCGN_05595 0.86 -0.1
994,056 - ydiM HEPCGN_05595 0.86 -0.6
994,081 + ydiM HEPCGN_05595 0.88 -1.9
994,105 + -0.1
994,106 - +0.3
994,135 - -0.1
994,206 + +0.9
994,229 + -1.4
994,229 + -0.2
994,230 - -1.3
994,292 + +0.2
994,323 + +0.5
994,350 + +0.4
994,350 + +1.0
994,351 - -0.1
994,520 - HEPCGN_05600 0.55 -0.4
994,630 + HEPCGN_05600 0.86 -1.6
994,630 + HEPCGN_05600 0.86 -0.9
994,700 - -2.5
994,707 - +0.5
994,718 - +0.4
994,926 + +0.1
994,930 - -0.5
995,024 + -0.3
995,108 + +0.4
995,109 - +0.2
995,380 + ydiK HEPCGN_05610 0.25 -0.0
995,380 + ydiK HEPCGN_05610 0.25 -1.6
995,479 + ydiK HEPCGN_05610 0.33 +1.2
995,502 - ydiK HEPCGN_05610 0.35 +0.9
995,502 - ydiK HEPCGN_05610 0.35 +0.6
995,548 + ydiK HEPCGN_05610 0.40 -0.1
995,552 - ydiK HEPCGN_05610 0.40 +0.5

Or see this region's nucleotide sequence